PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 32371.7 Da PI: 6.6571 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+ +W + ++++ ++R++k+c++rw++yl XP_004509048.1 14 RGPWSPEEDSKLKAYIQQHGTVaNWIALPQKIDLKRCGKSCRLRWLNYL 62 89******************88*************************97 PP | |||||||
2 | Myb_DNA-binding | 40.9 | 4.9e-13 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++eEd ++ + G++ W+ Ia++++ gRt++++k++w++ XP_004509048.1 70 IFSEEEDNIICSLYVNIGSR-WSVIAAHLP-GRTDNDIKNYWNT 111 59******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.93 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.48E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.69 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-11 | 71 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-7 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDSKLKAYIQ QHGTVANWIA LPQKIDLKRC GKSCRLRWLN 60 YLRPNLKHGI FSEEEDNIIC SLYVNIGSRW SVIAAHLPGR TDNDIKNYWN TKLKKKLLTK 120 QRKEQQAQAR KLFSLNQEIK RESGNLLLPV EVIPQTHNDW PIEHYSFPIP ITKASSVQDN 180 NLNNIQTLSI KNLETKLEEV EFSDSNQLQQ INVNINSQYP CDIYFPQDQL YYPSTESINW 240 GDIMSSLVSD IEGCNQTMPQ EDVTFDESMF YGIMQCLQTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 14 | 119 | 7 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509048.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509048.1 | 0.0 | transcription factor RAX3 isoform X2 | ||||
Swissprot | Q9M2Y9 | 1e-79 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A1S2YS48 | 0.0 | A0A1S2YS48_CICAR; transcription factor RAX3 isoform X2 | ||||
STRING | XP_004509047.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 8e-71 | myb domain protein 84 |
Publications ? help Back to Top | |||
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