PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 430aa MW: 49018.9 Da PI: 8.9364 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.8 | 7e-56 | 95 | 221 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv ++++++ ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_004508725.1 95 LPPGFRFHPTDEELISHYLYKKVIDSNFSA-RAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR- 187 79**************************99.89***************888999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgek++Wvmheyrle XP_004508725.1 188 GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 221 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-64 | 92 | 245 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.891 | 95 | 245 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-29 | 96 | 220 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MRLPYIPRFF LPKTPLFMPF FSSLFSLLNL NTTTTTFTFS CFLTLISLHF FSFFHTSLTP 60 FLFFSLHFIE LLRLTLEIME NVSVLSCKED EKMDLPPGFR FHPTDEELIS HYLYKKVIDS 120 NFSARAIGDV DLNKSEPWDL PWKAKMGEKE WYFFCVRDRK YPTGLRTNRA TEAGYWKATG 180 KDKEIFRGKS LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL EGKFSVHNLP KAAKNEWVIC 240 RVFQKSSAGK KTHISGIMRL DTLGNDLGSS VLPPLTDSSH SIGKIKQLND SAYVPCFSNS 300 IDVQRNQGGI FDSFTNNNSI YGVSSNPLIS TSSNPLYSNN NQVGCNLQFP SSVCGMQDQA 360 ILRALYENNG FKSERQQIVS VSKETDLTTD MNAETSSVVS NFDMSRRAFE NNHHRPPPAA 420 VDLDGTLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 92 | 251 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 92 | 251 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 92 | 251 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 92 | 251 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-53 | 92 | 251 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-53 | 92 | 251 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 92 | 251 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508725.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051637 | 0.0 | BT051637.1 Medicago truncatula clone MTYF5_F6_F7_F81G-M-19 unknown mRNA. | |||
GenBank | BT147860 | 0.0 | BT147860.1 Medicago truncatula clone JCVI-FLMt-11F23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508725.1 | 0.0 | NAC domain-containing protein 100 isoform X1 | ||||
Swissprot | Q9FLJ2 | 1e-140 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1S2YRE4 | 0.0 | A0A1S2YRE4_CICAR; NAC domain-containing protein 100 isoform X1 | ||||
STRING | XP_004508725.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-142 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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