PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508679.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 657aa    MW: 74898.8 Da    PI: 4.6503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015296317122
                     EEETTTTEEESSHHHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                     + C  Cgk F++  + k+H ++
  XP_004508679.1 296 FYCVLCGKKFKSEKQWKNHEQS 317
                     78*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.8E-23476IPR001623DnaJ domain
SuperFamilySSF465651.01E-214103IPR001623DnaJ domain
SMARTSM002712.1E-20669IPR001623DnaJ domain
CDDcd062572.80E-17766IPR001623DnaJ domain
PROSITE profilePS5007618.379777IPR001623DnaJ domain
PfamPF002264.6E-20874IPR001623DnaJ domain
PRINTSPR006253.7E-111028IPR001623DnaJ domain
PRINTSPR006253.7E-112843IPR001623DnaJ domain
PRINTSPR006253.7E-114969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.54E-14288338No hitNo description
SMARTSM004519.9E-6293327IPR003604Zinc finger, U1-type
SMARTSM003550.27296320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182296325IPR007087Zinc finger, C2H2
PfamPF121719.4E-11296321IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280298320IPR007087Zinc finger, C2H2
SMARTSM003555.7627651IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058627656IPR007087Zinc finger, C2H2
PROSITE patternPS000280629651IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MASAKRCHYE VLGGISRDCS PEEIRSAYRK LALQRHPDKL VKSGLSQAEA TAQFQELQHA  60
YEVLSDPKER AWYDSHRSQI LFSDPNSHSN SVVPDLFSYF SNTVYSGYSD SGKGFYKVYS  120
DVFDKIQANE INFAKKLGLG IDSVRQAPLM GNLDSPYAQV TAFYSYWLGF STVMDFCWAD  180
EYDAMAGPNR KSRRLMEEEN NKVRRKAKRE YNDTVRKLAD FVKKRDKRVI DMKVKKNLEM  240
EKKKEEEREK KMKLEKEKKE RAMAYEEPEW AKVDEEEVED LFEEDEFEGK KDEKEFYCVL  300
CGKKFKSEKQ WKNHEQSKKH KEKVAQFRDS LEDEEEELEV EVEEEGGSER EGVGEERLES  360
EEDGTEVNED QVGETDCGVD DLEERIRDGL NVADEENAHG VEPNADNDDD DEIFYAPHAN  420
EGEEAGVSVD YDDNDDDNDN DENGVLETMI AGHKGRVDFD ENDGDGDDDD EIGVLEAMLA  480
GRKSRKPGAS NPKSKASVTP TQMENENESD DVGAMEYNNR KVTRKKRRAK KEKGGKNGDE  540
SHVPANGKYE NINSNGNDDS YAQESSSQNF EETEDNGGKE NEQMGRDNKK ISNKPVDKKA  600
ISKDTKTKAK ISSKGRKAKN SSKNLGHFCE TCEEEFESRN KLHKHLSDSG HAAIKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1523530RKKRRAKK
2524529KKRRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508679.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-160JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A1S2YRB00.0A0A1S2YRB0_CICAR; DNAJ protein JJJ1 homolog
STRINGXP_004508679.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-149DNAJ heat shock N-terminal domain-containing protein