PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 1017aa MW: 114474 Da PI: 7.5765 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.9 | 1.4e-21 | 18 | 119 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ F + ++L +gD+v+F ++++ XP_004508022.1 18 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELIAKDLHDNAWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFI--RDEK 109 99*****************************9545444.38************************************************..5678 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_004508022.1 110 QQLLLGLRRA 119 8899999986 PP | |||||||
2 | Auxin_resp | 122.6 | 2.8e-40 | 144 | 226 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++G ++g+sdldp+rW+nS+Wr+L+ XP_004508022.1 144 AAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGAITGISDLDPIRWKNSQWRNLQ 226 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-44 | 8 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-41 | 10 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.33E-18 | 17 | 109 | No hit | No description |
PROSITE profile | PS50863 | 11.801 | 18 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-21 | 18 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-19 | 18 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-35 | 144 | 226 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.1E-9 | 885 | 976 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.191 | 890 | 983 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.83E-8 | 904 | 968 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1017 aa Download sequence Send to blast |
MLASDIGLKQ NRQPTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELIA 60 KDLHDNAWTF RHIYRGQPKR HLLTTGWSVF ISTKRLFAGD SVLFIRDEKQ QLLLGLRRAN 120 RQQPALSSSV ISSDSMHIGI LAAAAHAAAN NSPFTIYYNP RASPSEFVVP LAKYNKAMYT 180 QVSLGMRFRM MFETEESGVR RYTGAITGIS DLDPIRWKNS QWRNLQVGWD ESTAGERPSR 240 VSVWDIEPVV TPFYICPPPF FRPKFPRQPG MSDDESNIEN AFKRAMPWIG DEFGMNDASS 300 SFFPGLSLVQ WMGMQQNNQF SAAQSGCFPS MLSSNTLQGN LGTDDPSKLL SFQAPVLSAP 360 NLQFNKPNLP NQINQLQQPP VSWPQQQQQL QQQQQQQQLQ QQQQQQQQLQ QQQQQKLQSL 420 SQIPTNQLQQ QRQQQLTESQ NLTLLQQQMP QQLGQQTQKH LQSSQQAITN NGVVSSNQIT 480 NQFVQQPSAY AQLQQQQLLS GSIPHQQSFQ SANKNTFPLT SLPQDSQFQQ RIDSQASLLQ 540 RQQQQTQLQQ SQLQVLQQNM PQRVPPNPPV TQTSQQNASE QQLHMQFLHK LQQQQQLLST 600 SSPLLQSQLL QQQNTHQQIQ QLPQLPTSQH HTQQLSNNAF STEKLLNSNN LSSSSLMQSQ 660 HLPVNRTQNT QKPLTITRAP STLTDGEAPS CSTSPSTNNC PVSPPNLLKR NQQVPNMLGG 720 CLLVEPASNM IRELQSKTDK HIKHEFANVK GSDQLKYKRT TIDQLEASSG TSYCLDPGNA 780 QQNFPLSNFC MEGDVQSNPR NNLLFDSSFD GLMPDTMLSR GYDSQKDLQN LLSNYGGAPR 840 DIETELSTAD ISSQSFGLPN MPGCSNDVGI NDTSGVLNNG LRANQTQRMR TYTKVQKRGS 900 VGRCIDVTRY KKYDELRYDL ARMFGIEGQL EDPQRTDWKL TYVDHENDIL LVGDDPWEEF 960 VRNVQSIKIL SSAEVQQMSL DGDLGNVQLP NQACSGTDSG NAWRGQYDDN SAASFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-125 | 5 | 247 | 144 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508022.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144483 | 0.0 | AC144483.10 Medicago truncatula chromosome 8 clone mth2-12f13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508022.1 | 0.0 | auxin response factor 19 isoform X5 | ||||
Refseq | XP_012573396.1 | 0.0 | auxin response factor 19 isoform X5 | ||||
TrEMBL | A0A1S3EEL9 | 0.0 | A0A1S3EEL9_CICAR; Auxin response factor | ||||
STRING | XP_004508018.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |