PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508019.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1125aa    MW: 126333 Da    PI: 6.9931
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.6e-21126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++
  XP_004508019.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELIAKDLHDNAWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFI--RDEK 217
                     99*****************************9545444.38************************************************..5678 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_004508019.1 218 QQLLLGLRRA 227
                     8899999986 PP
2Auxin_resp122.43.2e-40252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++G ++g+sdldp+rW+nS+Wr+L+
  XP_004508019.1 252 AAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGAITGISDLDPIRWKNSQWRNLQ 334
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100178.52E-18125217No hitNo description
SMARTSM010196.8E-21126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801126228IPR003340B3 DNA binding domain
PfamPF023621.7E-19126227IPR003340B3 DNA binding domain
PfamPF065072.6E-35252334IPR010525Auxin response factor
PfamPF023092.4E-99931084IPR033389AUX/IAA domain
PROSITE profilePS5174524.1919981091IPR000270PB1 domain
SuperFamilySSF542771.03E-710121076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1125 aa     Download sequence    Send to blast
MKAPSNSYLH NSGEGERKTI NSDLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ  60
TDFIPSYPNL PSKLICLLHN VALHADPETD EVYAQMTLQP VNQYDKEAML ASDIGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELIAKD LHDNAWTFRH  180
IYRGQPKRHL LTTGWSVFIS TKRLFAGDSV LFIRDEKQQL LLGLRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIYYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY TGAITGISDL DPIRWKNSQW RNLQVGWDES TAGERPSRVS VWDIEPVVTP  360
FYICPPPFFR PKFPRQPGMS DDESNIENAF KRAMPWIGDE FGMNDASSSF FPGLSLVQWM  420
GMQQNNQFSA AQSGCFPSML SSNTLQGNLG TDDPSKLLSF QAPVLSAPNL QFNKPNLPNQ  480
INQLQQPPVS WPQQQQQLQQ QQQQQQLQQQ QQQQQQLQQQ QQQKLQSLSQ IPTNQLQQQR  540
QQQLTESQNL TLLQQQMPQQ LGQQTQKHLQ SSQQAITNNG VVSSNQITNQ FVQQPSAYAQ  600
LQQQQLLSGS IPHQQSFQSA NKNTFPLTSL PQDSQFQQRI DSQASLLQRQ QQQTQLQQSQ  660
LQVLQQNMPQ RVPPNPPVTQ TSQQNASEQQ LHMQFLHKLQ QQQQLLSTSS PLLQSQLLQQ  720
QNTHQQIQQL PQLPTSQHHT QQLSNNAFST EKLLNSNNLS SSSLMQSQHL PVNRTQNTQK  780
PLTITRAPST LTDGEAPSCS TSPSTNNCPV SPPNLLKRNQ QVPNMLGGCL LVEPASNMIR  840
ELQSKTDKHI KHEFANVKGS DQLKYKRTTI DQLEASSGTS YCLDPGNAQQ NFPLSNFCME  900
GDVQSNPRNN LLFDSSFDGL MPDTMLSRGY DSQKDLQNLL SNYGGAPRDI ETELSTADIS  960
SQSFGLPNMP GCSNDVGIND TSGVLNNGLR ANQTQRMRTY TKVQKRGSVG RCIDVTRYKK  1020
YDELRYDLAR MFGIEGQLED PQRTDWKLTY VDHENDILLV GDDPWEEFVR NVQSIKILSS  1080
AEVQQMSLDG DLGNVQLPNQ ACSGTDSGNA WRGQYDDNSA ASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1701535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444830.0AC144483.10 Medicago truncatula chromosome 8 clone mth2-12f13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508019.10.0auxin response factor 19 isoform X2
TrEMBLA0A1S2YPR00.0A0A1S2YPR0_CICAR; Auxin response factor
STRINGXP_004508018.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19