PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508018.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1138aa    MW: 127942 Da    PI: 7.5944
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.6e-21139240199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++
  XP_004508018.1 139 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELIAKDLHDNAWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFI--RDEK 230
                     99*****************************9545444.38************************************************..5678 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_004508018.1 231 QQLLLGLRRA 240
                     8899999986 PP
2Auxin_resp122.43.2e-40265347183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++G ++g+sdldp+rW+nS+Wr+L+
  XP_004508018.1 265 AAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGAITGISDLDPIRWKNSQWRNLQ 347
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-44129268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-41131254IPR015300DNA-binding pseudobarrel domain
CDDcd100178.66E-18138230No hitNo description
SMARTSM010196.8E-21139241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801139241IPR003340B3 DNA binding domain
PfamPF023621.7E-19139240IPR003340B3 DNA binding domain
PfamPF065072.6E-35265347IPR010525Auxin response factor
PfamPF023092.4E-910061097IPR033389AUX/IAA domain
PROSITE profilePS5174524.19110111104IPR000270PB1 domain
SuperFamilySSF542771.03E-710251089No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1138 aa     Download sequence    Send to blast
MSNHRVKRKH ICMFLLKGVN VMSVLTTGER KTINSDLWHA CAGPLVSLPP VGSLVVYFPQ  60
GHSEQVAASM QKQTDFIPSY PNLPSKLICL LHNVALHADP ETDEVYAQMT LQPVNQYDKE  120
AMLASDIGLK QNRQPTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDY SMQPPAQELI  180
AKDLHDNAWT FRHIYRGQPK RHLLTTGWSV FISTKRLFAG DSVLFIRDEK QQLLLGLRRA  240
NRQQPALSSS VISSDSMHIG ILAAAAHAAA NNSPFTIYYN PRASPSEFVV PLAKYNKAMY  300
TQVSLGMRFR MMFETEESGV RRYTGAITGI SDLDPIRWKN SQWRNLQVGW DESTAGERPS  360
RVSVWDIEPV VTPFYICPPP FFRPKFPRQP GMSDDESNIE NAFKRAMPWI GDEFGMNDAS  420
SSFFPGLSLV QWMGMQQNNQ FSAAQSGCFP SMLSSNTLQG NLGTDDPSKL LSFQAPVLSA  480
PNLQFNKPNL PNQINQLQQP PVSWPQQQQQ LQQQQQQQQL QQQQQQQQQL QQQQQQKLQS  540
LSQIPTNQLQ QQRQQQLTES QNLTLLQQQM PQQLGQQTQK HLQSSQQAIT NNGVVSSNQI  600
TNQFVQQPSA YAQLQQQQLL SGSIPHQQSF QSANKNTFPL TSLPQDSQFQ QRIDSQASLL  660
QRQQQQTQLQ QSQLQVLQQN MPQRVPPNPP VTQTSQQNAS EQQLHMQFLH KLQQQQQLLS  720
TSSPLLQSQL LQQQNTHQQI QQLPQLPTSQ HHTQQLSNNA FSTEKLLNSN NLSSSSLMQS  780
QHLPVNRTQN TQKPLTITRA PSTLTDGEAP SCSTSPSTNN CPVSPPNLLK RNQQVPNMLG  840
GCLLVEPASN MIRELQSKTD KHIKHEFANV KGSDQLKYKR TTIDQLEASS GTSYCLDPGN  900
AQQNFPLSNF CMEGDVQSNP RNNLLFDSSF DGLMPDTMLS RGYDSQKDLQ NLLSNYGGAP  960
RDIETELSTA DISSQSFGLP NMPGCSNDVG INDTSGVLNN GLRANQTQRM RTYTKVQKRG  1020
SVGRCIDVTR YKKYDELRYD LARMFGIEGQ LEDPQRTDWK LTYVDHENDI LLVGDDPWEE  1080
FVRNVQSIKI LSSAEVQQMS LDGDLGNVQL PNQACSGTDS GNAWRGQYDD NSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1702736844388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444830.0AC144483.10 Medicago truncatula chromosome 8 clone mth2-12f13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192739.10.0auxin response factor 19 isoform X1
TrEMBLA0A3Q7XGR00.0A0A3Q7XGR0_CICAR; Auxin response factor
STRINGXP_004508018.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19