PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004507268.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 204aa MW: 23940.5 Da PI: 6.0219

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004507268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.3	1.1e-15	87	145	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ +++ +++ +e+ XP_004507268.1 87 RKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENQQLIEKLNHVSENHDQVVQEN 145 578**********************************************9999887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-13	83	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.795	85	148	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-13	87	137	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.3E-11	87	159	No hit	No description
Pfam	PF00170	4.4E-13	87	144	IPR004827	Basic-leucine zipper domain
CDD	cd14702	8.41E-19	88	139	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MQTNELTGLN YFLPNSNTSP YLQNHNMIQN NIPTFQLQKF SNQLFNYQNI PPHHQFHDFN 60 SSQSSCISSN STSDEADEQN LSLINERKHR RMISNRESAR RSRMRKQKHL DELWSQVVWL 120 RNENQQLIEK LNHVSENHDQ VVQENAKLKE ETLELRQMLR DMQIQSPFIP SFSPLEDHIN 180 CNSEFLTPDS PNNSISSSMD DLLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	106	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004507268.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146721	1e-117	AC146721.7 Medicago truncatula clone mth2-145n10, complete sequence.
GenBank	BT146028	1e-117	BT146028.1 Medicago truncatula clone JCVI-FLMt-7A22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507268.1	1e-147	basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-40	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A1S2YN39	1e-146	A0A1S2YN39_CICAR; basic leucine zipper 43-like
STRING	XP_004507268.1	1e-147	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	3e-46	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]