PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004507244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 28153.5 Da PI: 6.5839 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G ++W+ +++ g+ R++k+c++rw +yl XP_004507244.1 14 KGAWSEEEDHKLIAYIERHGHPNWRQLPKYAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+ E++ + +++k++G++ W+ Ia+ + gRt++++k++w+++l XP_004507244.1 67 RGKYTPMEEQMIMELHKKHGNK-WSMIAENLV-GRTDNEIKNYWHSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 8 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.163 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.16E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.926 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 64 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.74E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVRAPYFDEN GIKKGAWSEE EDHKLIAYIE RHGHPNWRQL PKYAGLSRCG KSCRLRWMNY 60 LRPNLKRGKY TPMEEQMIME LHKKHGNKWS MIAENLVGRT DNEIKNYWHS HLKRFSKHNE 120 TNFGEETEKT KKICDSVSGD SHHILESSLS MSSEISYTTT QGNSPSISSE FNHVVESNVN 180 LYRKEDSVAS WETLDGFSNN FWTEPFVLES ALSQDCFPIS FYCGVEAEDP FFYETLKLKF 240 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 114 | 7 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004507244.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507244.1 | 0.0 | transcription factor MYB13-like | ||||
TrEMBL | A0A1S2YMW3 | 0.0 | A0A1S2YMW3_CICAR; transcription factor MYB13-like | ||||
STRING | XP_004507244.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 3e-54 | myb domain protein 13 |