PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507178.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 358aa    MW: 40466.3 Da    PI: 5.797
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS41.22.5e-13269330164
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64 
                     l++lLl c + v  +d+ +a++lL+++++++sp gd++qRl +yf+++L+arl +  +++ k+l
  XP_004507178.1 269 LRNLLLLCSQSVYVNDTINANELLKQIKQHSSPFGDATQRLSHYFANGLNARLIG--DGTIKIL 330
                     6899*************************************************98..6666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.06243358IPR005202Transcription factor GRAS
PfamPF035148.8E-11269330IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MFCGKLATMT SVTDPSLEDT DFLETIKFIS QILMEENVEQ LPVYDSLSLQ ITEKSFHDAL  60
FHKTSQNPLD IHNSNAGTSN THNSPDTILG DHGFQFNSSA IPHTFSNSVS DGLRDLDTSI  120
TNMLAQNIFS DADSVSQFRK GLEEATKFLP PQPQLLTALE SSHFNKIGEK DNHPLVLKGR  180
KNHEREEIDT KEEEERSNKQ LALGVVDEDE LSEMFDKALL NVEHLPHCNE QNYWLQNEQA  240
NTEKQQPSSN RRKACPKKQD RKHEETVDLR NLLLLCSQSV YVNDTINANE LLKQIKQHSS  300
PFGDATQRLS HYFANGLNAR LIGDGTIKIL YLMKTATGCF KVGKVVFYML PHVGCHHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742905e-33AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507178.10.0scarecrow-like protein 33
TrEMBLA0A1S2YMS70.0A0A1S2YMS7_CICAR; scarecrow-like protein 33
STRINGXP_004507178.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.13e-43GRAS family protein