PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507177.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 660aa    MW: 74612.7 Da    PI: 5.7178
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.93e-1162926573373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+av   d+++a+++L+++++++sp+gd +qRla+yf+++L+arl+  ++ +yk l++ ++     ++ l+a+k++  +sP+ ++s+++
  XP_004507177.1 292 TLLTQCAQAVGGYDQSNANEILKQIRQHSSPHGDGLQRLAHYFANGLEARLFA-GTPMYKLLSSASS-----ADMLKAYKVYITASPFQRMSNFL 380
                     69**************************************************9.8999987766655.....69********************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++Il+ +++++ +HiiDf++ +G+QWp+L+q L++R++gpp+lRiTgv+ p++g   +e++eetg+rL+k+++++gvpfe+n  +a+++++++
  XP_004507177.1 381 ANRTILKLAQNKSSLHIIDFGVFYGFQWPCLIQRLSERAGGPPRLRITGVDLPQPGfrPAERVEETGRRLEKYCKRFGVPFEYNC-LAQKWDTIR 474
                     *******************************************************9*****************************.6******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     le+L+++++E+++Vn+ ++l++l de+v+ + +rd+vL l+++++P+++++   +  +n++ Fl+rf eal ++s+lfd+lea++pre+  r + 
  XP_004507177.1 475 LEDLKIDREEVTVVNCLYRLKNLSDETVTANCPRDAVLGLIRRINPNIFIHGVVNGTYNAPFFLTRFREALFHFSSLFDMLEATVPREDPYRLMF 569
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     E+ l+gr++vnvvacegaer+er et+++W+ r ++a Fk+vpl+ + ++++k +++k +s+ + v+e+ +++++gWk+r L +vS+W
  XP_004507177.1 570 EKGLFGRDAVNVVACEGAERVERPETYKQWQVRNKRARFKQVPLEPELVDKVKEMVKKEYSKDFVVDEDGKWVLQGWKGRILHAVSCW 657
                     ************************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.623264638IPR005202Transcription factor GRAS
PfamPF035141.1E-113292657IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MFSTDTLVGN FPDSVCMFGN IPVSVFSSQN PENGFKVEDS DSTSPSNHSE SSESSKYSNP  60
ILRYISDILM DEEDDLERKP CMLQDCLRLQ AAEKSFFDVL GQNKPNQQYQ DFTLDDNFGG  120
GIGISTSSEC YSNSSNTTDN SIVDYDSQEN TYEVLDGMPH NQFRDTDTQG VFHFPNGDWK  180
MNEEGTMVWG SRGSREKRGH LMNGVDISHE EDLRSSKISA VYYDDTELSE MFDEVLLCRD  240
GKSPSFLCAN SESSNSQISS SGGSKSNGKT SRSKKGSNKG TANLTTTVDL WTLLTQCAQA  300
VGGYDQSNAN EILKQIRQHS SPHGDGLQRL AHYFANGLEA RLFAGTPMYK LLSSASSADM  360
LKAYKVYITA SPFQRMSNFL ANRTILKLAQ NKSSLHIIDF GVFYGFQWPC LIQRLSERAG  420
GPPRLRITGV DLPQPGFRPA ERVEETGRRL EKYCKRFGVP FEYNCLAQKW DTIRLEDLKI  480
DREEVTVVNC LYRLKNLSDE TVTANCPRDA VLGLIRRINP NIFIHGVVNG TYNAPFFLTR  540
FREALFHFSS LFDMLEATVP REDPYRLMFE KGLFGRDAVN VVACEGAERV ERPETYKQWQ  600
VRNKRARFKQ VPLEPELVDK VKEMVKKEYS KDFVVDEDGK WVLQGWKGRI LHAVSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4829665925380Protein SCARECROW
5b3h_A8e-4929665924379Protein SCARECROW
5b3h_D8e-4929665924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507177.10.0scarecrow-like protein 30
SwissprotQ9XE581e-180SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S2YMW00.0A0A1S2YMW0_CICAR; scarecrow-like protein 30
STRINGXP_004507177.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-170GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]