PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 155aa MW: 18088.4 Da PI: 10.4725 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 89 | 132 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+el++++ +++ +g k Ia++ g +Rt q+ s+ qk+ XP_004506259.1 89 HWTKEEHELFLQGLRLYNKGELKNIAKHAG-TRTSTQVASHAQKH 132 6*****************************.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 81 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.761 | 81 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.81E-15 | 84 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-11 | 85 | 136 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.8E-10 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-11 | 89 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-10 | 90 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MIKRPKYHFH TTNNMDDIID PNSIHTMHMS STRPNQSLSP FQQSHFNYPN SINRNSIDVE 60 FPTCSDYNAN LANQNKASPP KKEKKKVKHW TKEEHELFLQ GLRLYNKGEL KNIAKHAGTR 120 TSTQVASHAQ KHFNRQTLTP EKRKRKSIYD MTLGE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506259.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004506259.1 | 1e-114 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1S2YKQ8 | 1e-113 | A0A1S2YKQ8_CICAR; transcription factor DIVARICATA-like | ||||
STRING | XP_004506259.1 | 1e-113 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19356 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09450.1 | 3e-15 | MYB_related family protein |