PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 32703.4 Da PI: 6.0682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.3 | 7.6e-10 | 19 | 68 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+iL +v+ +k+L XP_004505689.1 19 RKTQKADREKLRRDRLNEQFVELGNILDPD----RPKNDKATILGDTVQLLKDL 68 6788999********************997....79**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.944 | 18 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-13 | 18 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-13 | 18 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.02E-7 | 19 | 73 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-7 | 24 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MLLGDSKPEV EPMDCTAARK TQKADREKLR RDRLNEQFVE LGNILDPDRP KNDKATILGD 60 TVQLLKDLTS QVSKLKDEHT MLNEESRELT QEKNDLREEK ASLKSDIENL NNQYQLQLRT 120 MFPWTAMDHS VMMAPPSYPY PVPMPVPPGP IPMQPYPFYA NQHPAVIPNP CSTYVPFLAP 180 NTIVEQQSTQ YVSPPLHPGS RSHVSGKQDS KNKSSRESRA ERNEESNDVA TDLELKTPGS 240 SADQDLSSAQ KKSSKSSRKE SSFTEGSSLG KCSSSYSVQD SSSSSVVGSR KASE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505689.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094437 | 1e-165 | BT094437.1 Soybean clone JCVI-FLGm-24H6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505689.1 | 0.0 | transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 2e-94 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A1S2YJU9 | 0.0 | A0A1S2YJU9_CICAR; transcription factor bHLH121 | ||||
STRING | XP_004505689.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 5e-75 | bHLH family protein |
Publications ? help Back to Top | |||
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