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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_004505608.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family |
GRAS |
| Protein Properties |
Length: 539aa MW: 59815.5 Da PI: 4.6512 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004505608.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 338.7 | 1e-103 | 179 | 539 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
++L+ecA+ +++ + ++a ++L++l++ s++g+p+qR+ +yf +AL ++++ ++++++++ ++ +e + ++k++++++P+ kf+hlt
XP_004505608.1 179 KTLTECATLIET-EPNRAIETLTNLKNSISQNGTPIQRVSFYFSQALTNKVTAQGESTSSISTT-------WEELTLSYKALNDACPYSKFAHLT 265
78********99.67889999********************************77777754333.......45678999**************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
aNqaIlea+eg + +Hi+Df+i qG+QW+aLlqa+a+R++g+p s+Ri g+ +++ g +l +tg+rL++fA+ lg++fef++ + + ++ l
XP_004505608.1 266 ANQAILEATEGFTNIHIVDFGIVQGIQWAALLQAFATRSSGKPnSVRISGIPAMALGisPVSSLTATGNRLSEFAKLLGLNFEFTP-ILTPIQLL 359
***************************************77776*********99889999*************************.799***** PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseeri 283
+ ++ ++p+EalaVn++lql++llde+++ + + L+l ksl+Pk+v++ e ea++ ++ F++rf a++y++a+f+sle +++ +s er
XP_004505608.1 360 NETSFCIQPNEALAVNFMLQLYNLLDETMDAVE---TALRLAKSLNPKIVTLGEYEASLtSRVGFVKRFNTAFNYFAAFFESLEPNMAFDSPERF 451
*************************99999999...9**********************7888******************************** PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
vE llgr+i v+ ++ r+e +e+W+ +e++GF++v+ls++a++qak ll +++ + y++ e++ ++ l Wkd pL++vS+Wr
XP_004505608.1 452 QVESLLLGRRIDGVIGVRE-----RMEDKERWKVLMESCGFESVSLSHYATSQAKILLWNYSyGSLYSLVESQPGFLsLAWKDVPLLTVSSWR 539
***************8764.....669999********************************9999****99999888**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIN QKQQQEQEQQ QQNNLLATTL TTNPLSLHHP WNNTPLIVTS 60
SLPPFTDFTD PFHVASGPDP SFHFPPLDPH STTFRFSDFD SDDWMDTLMA AADTQHSDFQ 120
LNPFSSCPTR LSPPPDLNRV IFSDSQSPTI PLQPPTLTKN DTNTETTSSF SSSPNPILKT 180
LTECATLIET EPNRAIETLT NLKNSISQNG TPIQRVSFYF SQALTNKVTA QGESTSSIST 240
TWEELTLSYK ALNDACPYSK FAHLTANQAI LEATEGFTNI HIVDFGIVQG IQWAALLQAF 300
ATRSSGKPNS VRISGIPAMA LGISPVSSLT ATGNRLSEFA KLLGLNFEFT PILTPIQLLN 360
ETSFCIQPNE ALAVNFMLQL YNLLDETMDA VETALRLAKS LNPKIVTLGE YEASLTSRVG 420
FVKRFNTAFN YFAAFFESLE PNMAFDSPER FQVESLLLGR RIDGVIGVRE RMEDKERWKV 480
LMESCGFESV SLSHYATSQA KILLWNYSYG SLYSLVESQP GFLSLAWKDV PLLTVSSWR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC142222 | 0.0 | AC142222.22 Medicago truncatula clone mth2-27d20, complete sequence. |
