PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505406.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 370aa    MW: 42715 Da    PI: 7.3107
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505406.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.7e-21107167257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++t+ ql +Leel+++  ++psae+++++A++l    +++ ++V++WFqN++a+e++
  XP_004505406.2 107 SSRWSPTPVQLLVLEELYRQgMKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 167
                     58*****************99**************************************97 PP
2Wus_type_Homeobox113.31.3e-36106169265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
     XP_004505406.2 106 QSSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 169
                        689***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-13101170IPR009057Homeodomain-like
PROSITE profilePS5007111.92103168IPR001356Homeobox domain
SMARTSM003891.6E-7105172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-9108167IPR009057Homeodomain-like
PfamPF000468.1E-19108167IPR001356Homeobox domain
CDDcd000862.59E-4109163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MFLLQRSFVP PINTVFFHNF LSILSSLTLL TLFSNREIFR DLSFPSFLSA TPNSNHNSHA  60
PPKIATISSI VQPYCICTHC NHLLPFNHHV EQEQEQGTSN NMQGQQSSRW SPTPVQLLVL  120
EELYRQGMKT PSAEQIQQIA SQLRQFGKIE GKNVFYWFQN HKARERQKRR RREMEETTAS  180
STQDKKDKHK FLMGNSQMQE DAGLKETKKW ASTSNCSEHA EENAVALDIA EKGSSGWAQF  240
EERDIQLQVL RKNIAEKQGK CQNIEIPYYF PPFTIPTTTT SSTSVAAYRT LCSNNNNTQI  300
LTPPNYVLNR ENLKYYEEQN AEPRTLDLFP VKGDHELQDQ RKSMFCVNDS MDTEIITSSN  360
QFFEFLPLRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505406.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505406.20.0WUSCHEL-related homeobox 6 isoform X2
TrEMBLA0A1S2YIR70.0A0A1S2YIR7_CICAR; WUSCHEL-related homeobox 6 isoform X2
STRINGXP_004505406.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.13e-27WOX family protein