PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505388.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 328aa    MW: 37850.3 Da    PI: 5.9058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-15153246294
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+l++sdv+++gr++lpk+ aee    ++ +e+++l+l+d  s  +W+vk+++  ++k ++yvl+ ++ + vk  +L +gDfv+++  +++ ++
  XP_004505388.1 153 TKKLKNSDVTSLGRIILPKREAEEKlpALS-REGMELVLNDvYSELEWKVKFKFwiNGKTRMYVLE-NTGNLVKHYKLHAGDFVTLY--EDEFKN 243
                     699***********************6554.6899******7788*******99666667779999.********************..445555 PP

                     .EE CS
              B3  92 lvv 94 
                     +++
  XP_004505388.1 244 MYM 246
                     555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-21146250IPR015300DNA-binding pseudobarrel domain
CDDcd100177.83E-17151246No hitNo description
SuperFamilySSF1019365.89E-16151249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.783152252IPR003340B3 DNA binding domain
SMARTSM010192.2E-12152252IPR003340B3 DNA binding domain
PfamPF023621.1E-11153243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDSFFTNSSS SSSSTTSNPI PSLFQSSNSS ISQPNMSHSQ MNAHISDNTA FPTPYSSYNY  60
NPSMNHPQYQ GYPYLIPNTP EVQAQREEDR KKMEAYRCKI AREQRKQLLQ KRRSTPSKAS  120
EGTRQPIYIQ VREPIVPNVF FTPDGKRLEE ILTKKLKNSD VTSLGRIILP KREAEEKLPA  180
LSREGMELVL NDVYSELEWK VKFKFWINGK TRMYVLENTG NLVKHYKLHA GDFVTLYEDE  240
FKNMYMSIHK DPKHEELELI PCAEHAKDKE PNPLSCRETD KTTSIRAQTI LENDVGNGDG  300
DDDDDQQQTR LNEVYESLQN IFDVCYPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-341422553117B3 domain-containing transcription factor LEC2
6j9c_D4e-341422553117B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004505388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505388.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A1S2YIQ70.0A0A1S2YIQ7_CICAR; B3 domain-containing transcription factor LEC2
STRINGXP_004505388.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.15e-34B3 family protein