PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505077.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 396aa MW: 42926.9 Da PI: 8.2756

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	48	108	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ XP_004505077.1 48 QQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 108 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-33	50	106	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	51	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MFGNCDEKTV TPNRWTQSEI DDHHKVSMAS NGSTRVMEKP GQDLVQQQQQ ALRCPRCDSS 60 NTKFCYYNNY SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVKRS STTHSSNNID 120 NSTNTIVASP SSSSNPTSAN SNPPSQLHNF DISNSTSNHI NTLLYGGGNG NSCHDVMNFP 180 FSTRFNSRVV SSSSSGYDNL QVNNSCLGLG FSSGLLMSGS GGEVNHHYHD AGYNRNGFSS 240 NNNNNHTLVS SYNSIFGSSS TSTNSLASTP VMTSLLSSTL LQQKFMSSTG TSSGGMKDDI 300 FHHEMKMEGN SSSEVAGIMA SKEVKLCEGQ NRLQEWNNVN ANGGVAVAFQ NQMEHLGLSD 360 TSSLYWNNHN SSNTATGLGV WSDQPNNIGP SVTSLI

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MFGNCDEKTV TPNRWTQSEI DDHHKVSMAS NGSTRVMEKP GQDLVQQQQQ ALRCPRCDSS  60
NTKFCYYNNY SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVKRS STTHSSNNID  120
NSTNTIVASP SSSSNPTSAN SNPPSQLHNF DISNSTSNHI NTLLYGGGNG NSCHDVMNFP  180
FSTRFNSRVV SSSSSGYDNL QVNNSCLGLG FSSGLLMSGS GGEVNHHYHD AGYNRNGFSS  240
NNNNNHTLVS SYNSIFGSSS TSTNSLASTP VMTSLLSSTL LQQKFMSSTG TSSGGMKDDI  300
FHHEMKMEGN SSSEVAGIMA SKEVKLCEGQ NRLQEWNNVN ANGGVAVAFQ NQMEHLGLSD  360
TSSLYWNNHN SSNTATGLGV WSDQPNNIGP SVTSLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505077.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505077.1	0.0	dof zinc finger protein DOF1.4-like isoform X1
TrEMBL	A0A1S2YIP9	0.0	A0A1S2YIP9_CICAR; dof zinc finger protein DOF1.4-like isoform X1
STRING	XP_004505077.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-34	Dof family protein