PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004505056.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LSD

Protein Properties

Length: 126aa MW: 13756.9 Da PI: 8.7225

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004505056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.1	2.8e-13	39	63	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y rGA++V+C++C+tV XP_004505056.1 39 CGSCRRLLAYQRGAKHVKCSCCQTV 63 ************************9 PP
2	zf-LSD1	41.9	1.7e-13	77	101	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ VRC++C +V XP_004505056.1 77 CGSCAVLLMYPYGASQVRCSSCRFV 101 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.7E-17	36	66	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.5E-11	39	63	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.0E-12	74	102	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.8E-11	77	101	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MQRQQVKKEE DDDGPPPGWQ PIPTPPQPLP SVGFAQMVCG SCRRLLAYQR GAKHVKCSCC 60 QTVNIVLEAD QVGQVKCGSC AVLLMYPYGA SQVRCSSCRF VTEIGAHNKR PPWSVQSKPT 120 PPKTGC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004505056.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505056.1	2e-88	protein LOL2
Swissprot	O65426	2e-43	LOL2_ARATH; Protein LOL2
TrEMBL	A0A1S2YIG6	4e-87	A0A1S2YIG6_CICAR; protein LOL2
STRING	XP_004505056.1	7e-88	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-43	lsd one like 2