PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504967.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 209aa    MW: 24113.7 Da    PI: 5.4443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-104992755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    e Er+RR ++  ++ +Lr+l+P       + ++Ka+i e A+ YI +Lq
  XP_004504967.1 49 ETERKRRMKLSARLLKLRSLVPII-----TNMNKATIIEDAISYIMQLQ 92
                    78*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2494291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1546111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-104897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-74892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.27E-94996No hitNo description
Gene3DG3DSA:4.10.280.108.7E-1449114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEQGYDNRLS VSLDELCFNA ENGSTNRRIM NKKHYDDDGN KVFTSKNLET ERKRRMKLSA  60
RLLKLRSLVP IITNMNKATI IEDAISYIMQ LQNEVESLAQ ELQEMGTTAE EAGQKMYEPS  120
AAEKMKKWGV QEEVVELKKI DENKFWVKMI LENERGRFTR LMEALNDLGI EMMDPNVTTM  180
HGAYLITASL QSMFGALDIH QIPNIIKFN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504967.11e-155transcription factor DYT1
TrEMBLA0A1S2YHP41e-153A0A1S2YHP4_CICAR; transcription factor DYT1
STRINGXP_004504967.11e-154(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.15e-33bHLH family protein