PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 159aa MW: 18009.3 Da PI: 9.6954 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.1 | 6.6e-15 | 7 | 38 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 Cs+Cg + p+WR+gp+ ++ LCnaCG+++++ XP_004504192.1 7 CSHCGIVSAPHWRQGPEEKPVLCNACGIRFKH 38 ****************99999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.5E-7 | 1 | 60 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-10 | 5 | 56 | No hit | No description |
CDD | cd00202 | 5.20E-10 | 6 | 40 | No hit | No description |
PROSITE profile | PS50114 | 10.699 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.2E-12 | 7 | 38 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-11 | 7 | 40 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAKKGPCSHC GIVSAPHWRQ GPEEKPVLCN ACGIRFKHWG NLHNYTPKHC VPNNLNNHKL 60 VKDNGNTSSN VPDEDSDNGG KNSSNSWIYS KRRSQKGYKK MTPIQKFQKQ LFDEWRYHGK 120 AKEEDVLLFQ NMNNFIPSNE IGLGAILLKP TEDASSTSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504192.1 | 1e-117 | GATA transcription factor 26-like | ||||
TrEMBL | A0A1S2YGK1 | 1e-116 | A0A1S2YGK1_CICAR; GATA transcription factor 26-like | ||||
STRING | XP_004504192.1 | 1e-117 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12747 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 7e-19 | GATA transcription factor 27 |