PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 617aa MW: 69855.9 Da PI: 5.729 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.3 | 1.8e-15 | 425 | 471 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + ErrRR+++N++f +Lr+++P++ K +K++iL A+eY+++L+ XP_004503713.1 425 NHVMSERRRRAKLNERFLTLRSMVPSN-----SKDDKVSILDDAIEYLRKLE 471 799***********************8.....7****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.3E-54 | 7 | 189 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.022 | 421 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-14 | 424 | 475 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-18 | 424 | 484 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-18 | 425 | 483 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-13 | 425 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-15 | 427 | 476 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 0.001 | 546 | 613 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MVSENMKEQL ALAVRSIQWS YAIFWSESVN QSGVLNWGEG YYNGDIKTRK TSQGVELSSD 60 QIGLQRNEQL RELFRSLKTT ETSPQTKRPS AALSPEDLTD TEWYYLVCMS FVFKIGQGLP 120 GRALANGQPI WLINAYSTDC KVFSRALLAK SASIQTVVCF PFMKGVIELG TTDLVLEDLS 180 LIQQIKTSFL NILNVDDPSN TETIPNTRNN EGVACEAFDH NDFNVELIPE VEYDIINNTT 240 TSPNGSSNAL DINQLLDETF MVESINHRTS QVQSWQVIDD DLSNCVHNNS MNSSDCISQT 300 FASPQKINAS ADPKGGEDCN NQKMTLVDPL TDDWHYQGIL STLLKSADQL IMGVHFQNFH 360 QESSFCVWNK GGTVDCHRPR QGTSQKLLKK ILFEVPRMHM DGLLESQEEN DYREGTRLEA 420 DEGMNHVMSE RRRRAKLNER FLTLRSMVPS NSKDDKVSIL DDAIEYLRKL EKRIKELEAQ 480 RDPIDIESRS KKSTHDMVER TSDQYYNKTN NIKKPIVKKR KVCDIEETRR EVCLKGSSTS 540 VNMSDNRVVI EMKCPSRPGR ILEIMEVVNK LNIDFDSVQS TEADGSIHLI IKSKFTGPSN 600 ATTKKIKQAL QKVVSKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-16 | 19 | 189 | 24 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-16 | 19 | 189 | 24 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-16 | 19 | 189 | 24 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-16 | 19 | 189 | 24 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503713.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503713.1 | 0.0 | transcription factor EGL1 isoform X1 | ||||
TrEMBL | A0A1S2YFV2 | 0.0 | A0A1S2YFV2_CICAR; transcription factor EGL1 isoform X1 | ||||
STRING | XP_004503712.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-169 | bHLH family protein |