PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503551.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1121aa    MW: 123856 Da    PI: 6.889
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503551.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23141242199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++  ++l+ +d++g++W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++
  XP_004503551.1 141 FCKQLTASDTSTHGGFSVPRRAAEKIfppldfS-VQPPAQELVARDLHGKVWKFRHIYRGQPKRHLLTTGWSLFISGKKLLAGDSVLFI--RDEK 232
                     99*****************************73.3344459************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_004503551.1 233 QQLLLGIRRA 242
                     889****997 PP
2Auxin_resp1193.7e-39267350183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ +a++ +++s+GmRf+m+feteds +rr++Gtv+gvsdld+vrW+nS+Wr+L+
  XP_004503551.1 267 AAHAAANSSPFTVFYNPRASPSEFVIPLAKYYRAVYsHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQ 350
                     79********************************9889********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-42131270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-40132256IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-19140232No hitNo description
PfamPF023622.4E-21141242IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548141243IPR003340B3 DNA binding domain
SMARTSM010192.0E-23141243IPR003340B3 DNA binding domain
PfamPF065072.8E-34267350IPR010525Auxin response factor
PfamPF023092.7E-610071094IPR033389AUX/IAA domain
PROSITE profilePS5174527.08410091093IPR000270PB1 domain
SuperFamilySSF542775.23E-610221086No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1121 aa     Download sequence    Send to blast
MATLNKEAVT ATTTSTATAA VAAAHEVGEE KNGINQELWQ ACAGPLVNLP LAGTHVVYFP  60
QGHSEQVAAS LKKDGDAQIP NYSNLPSNLP CLLHSLTLHA DLETDEVYAR MTLQPVSSFD  120
MDALLRSDIS LKSSKPQPEF FCKQLTASDT STHGGFSVPR RAAEKIFPPL DFSVQPPAQE  180
LVARDLHGKV WKFRHIYRGQ PKRHLLTTGW SLFISGKKLL AGDSVLFIRD EKQQLLLGIR  240
RANRQPTHLS SSVLSSDSMH IGILAAAAHA AANSSPFTVF YNPRASPSEF VIPLAKYYRA  300
VYSHQISPGM RFRMMFETED SGTRRYMGTV IGVSDLDSVR WKNSQWRNLQ VGWDESAAGE  360
RRSRVSIWEI EPATAPFFIC PPPFFRSKRP RQPGMLDDEP FDFSNVFKST MPWLGDDMSI  420
KDPQGFHGLS LAQWMNIQQN PARSSSLQPN HVSSMSGSVL QNHPGADIAH QLGFSNQQIS  480
QSNNVNAPGI HQNSQQLDHL QKLPFTSSGL GTAMQPEQQL CNVSQYPRQN MANQTLPQSQ  540
VQTQLLNPPS IVQSNNILQP QQPSIQNHQL HRSLSQNPPQ QLQQTIMSQN QQQNMIQHTI  600
PDHINQQFHM SDNQVRLQLL QKLQQQQQTF LAQQSALQQP AQLIQNQDQQ RQLLDATQNS  660
RTVTPSQVLE IPPSLQNSLP EANSMIHQMA TPSSQNNIQF SHPSQQPKLQ YQQQHTQPGL  720
LSKMSSRVGL PPATTINQLS ANGCSIRTVA TATAPSVITD DVPSCSTSPS TNNCASALPP  780
VTTTQILRST IGDDMAQSAV TILSQNALET MSSNANVVKY VQPKYEVKPS LNMSENRNQG  840
NFYPQACLNG GAVQTDCLDT SSSTASVCLS QSDTHFHQND SQLPYNPQSM FCRDNIQNVE  900
VQADARCNVA YGNGNEQMRM PLNLDSPVTK GTTRSGKDLS NNFSSGGLLG GYENNSGAQP  960
ELSSSMVSHS FELPDMTFNS IDSTVNDSSF LNTGPWAPPP PPQQFQRMRT YTKVYKRGAV  1020
GRSIDITRYS GYEELKHDLA RRFGIEGQLE DRQRIGWKLV YVDHENDVLL VGDDPWEEFV  1080
ICVRCIKILS PQEVQQMSID GDFGNGGLPK QAGSSSDGGN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592837145388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503551.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400230.0AC140023.13 Medicago truncatula clone mth2-32h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503551.10.0auxin response factor 19 isoform X1
TrEMBLA0A1S2YEA20.0A0A1S2YEA2_CICAR; Auxin response factor
STRINGXP_004503551.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19