PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 385aa MW: 42904 Da PI: 7.0835 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.9 | 1.8e-08 | 129 | 149 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg XP_004503514.1 129 ACPDFRK-GSCKKGDSCEFAHG 149 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.0E-6 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 129 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 23 | 159 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.211 | 159 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MSMMLGEPPH RTNPTIHVPP WQMMSDSTAE IFSPLTTNDD YSPYYLQEAL SALQHYIPSN 60 EHDDDSDSDA IPSHESVDVY SCDNFRMFEF KIRRCARGRS HDWTECPYAH PGEKARRRDP 120 RKFHYSGTAC PDFRKGSCKK GDSCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH 180 TSEQLRTPTQ QSPRSVNSTD SYDGSPLRLA IESSCVKSLP FMSSPGSVSP PVESPPMSPL 240 TSSLGRSFGF GSVNVNEMVV SLRNLQLGKM KSLPSSWNVQ MGSPRFGSPR GPVIRPGFCS 300 LPTTPTQTPN RSGVNHFDLW DQRCEEEPAM ERVESGRDIR VKMFEKLSKE NSLDRSGLGS 360 GSGSGQVDGA PDVGWVSELV SPFLG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ212173 | 0.0 | FJ212173.1 Cicer arietinum zinc finger protein ZF3 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503514.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-132 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1S2YE68 | 0.0 | A0A1S2YE68_CICAR; zinc finger CCCH domain-containing protein 20 | ||||
STRING | XP_004503514.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-129 | C3H family protein |
Publications ? help Back to Top | |||
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