PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503280.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 370aa    MW: 41911.6 Da    PI: 7.9895
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.9e-2292151357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  XP_004503280.1  92 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 151
                     7*****************99**************************************97 PP
2Wus_type_Homeobox114.64.8e-3791153365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
     XP_004503280.1  91 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 153
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-589156IPR001356Homeobox domain
PfamPF000467.4E-2092151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-992151IPR009057Homeodomain-like
SuperFamilySSF466892.06E-1292157IPR009057Homeodomain-like
CDDcd000861.63E-693153No hitNo description
PROSITE profilePS5007111.45197152IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MWMVGYNEGS DFNVAADYPF NGRKLRPIIP RPVTSTTPPN NTSTTPCLNR NIHANDFFSQ  60
YHNLQAAAAA AASVGDQSKR TELNNSAVVV SSRWNPTPEQ LRALEELYRR GTRTPSAEQI  120
QQITAQLRRF GKIEGKNVFY WFQNHKARER QKRRRQMESS AADQFDATTS LVEKKDLGSS  180
RTVFEVEQTK NNWLPSTNST TSTLAEESVS IQRAVAAGKA DQCRTDGWVQ FDELELQQRR  240
NFMERNATWH MMQFTCPHPT TLLIPNNSSN YTSSITTTTP TATLTTTLMD PKHDLSLFIS  300
PHTHSQRQNG FHNNITHNDD HCVESQTLQL FPIRNGDGCS DIINHHKETE ISASAMNAPS  360
HFIEFLPLKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503280.10.0WUSCHEL-related homeobox 1 isoform X1
TrEMBLA0A1S2YEK00.0A0A1S2YEK0_CICAR; WUSCHEL-related homeobox 1 isoform X1
STRINGXP_004503280.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-57WUSCHEL related homeobox 1