PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503135.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 622aa    MW: 68330.4 Da    PI: 4.914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.61.5e-1392486161374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+++++cAea+++++l+la+al++++  las++  +m+++a+yf+ AL +r+++       ++p ++ + ++ s++l++   f+e sP+lkf+h
  XP_004503135.1 248 LVHTMMACAEAIQQENLKLADALVKHIGLLASSQTGAMRKVASYFAHALGRRIYG-------SFPEETMD-SSFSDVLHM--HFYESSPYLKFAH 332
                     6899***************************************************.......44444443.445555555..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g+ rvH++Df+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v+++l+dl+
  XP_004503135.1 333 FTANQAILEAFAGAGRVHVVDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLD 427
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.......lpre 278
                     +++L+++pgEa+aVn+v++lh++l++++s+e+    vL++vk+++Pk+v++veqea+hn++ F++rf+eal+yys+lfdsle +           
  XP_004503135.1 428 PNMLEIRPGEAVAVNSVFELHSMLARPGSIEK----VLNTVKRIKPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSssnssssT--- 515
                     ********************************....*********************************************88844444442... PP

            GRAS 279 s....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                           ++  +++ +lgr+i+nvva eg +r+erhetl++Wr+r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+
  XP_004503135.1 516 GsgssGQDLLMSELYLGRQICNVVAYEGVDRVERHETLSQWRSRMGAAGFDPVHLGSNAFKQASTLLALFAgGDGYRVEENNGCLMLGWHTRSLI 610
                     0455699**************************************************************************************** PP

            GRAS 369 svSaWr 374
                     ++SaW+
  XP_004503135.1 611 ATSAWK 616
                     *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.4E-3662129IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.3E-3462135No hitNo description
PROSITE profilePS5098568.648222595IPR005202Transcription factor GRAS
PfamPF035145.1E-137248616IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MKRDHQETYG GSGRVSGNKT TTTNNKSNFV SVKEECSSMQ NNSLNGKSNM WREEKENSGG  60
MDEFLAALGY KVRSSDMADV AQKLEQLEMV MGCAQEDGIN HLSSDTVHYD PADLYSWVQT  120
MLTELNPSNT NLIDPSSLLQ DNNINNNNLP IDDPLDSSSS SSILNNTFND DSEYDLSAIP  180
GMAVYPPQYH NQENEIENKI VNSNKRLKTW GNNESETESN DVLPALSPPA EHTRPVVLVD  240
SQETGVRLVH TMMACAEAIQ QENLKLADAL VKHIGLLASS QTGAMRKVAS YFAHALGRRI  300
YGSFPEETMD SSFSDVLHMH FYESSPYLKF AHFTANQAIL EAFAGAGRVH VVDFGLKQGM  360
QWPALMQALA LRPGGPPTFR LTGIGPPQPD NTDALQQVGW KLAQLAQTIG VQFEFRGFVC  420
NSLADLDPNM LEIRPGEAVA VNSVFELHSM LARPGSIEKV LNTVKRIKPK IVTIVEQEAN  480
HNGPVFVDRF TEALHYYSSL FDSLEGSSSN SSSSTGSGSS GQDLLMSELY LGRQICNVVA  540
YEGVDRVERH ETLSQWRSRM GAAGFDPVHL GSNAFKQAST LLALFAGGDG YRVEENNGCL  600
MLGWHTRSLI ATSAWKLPLS ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-7024361514378Protein SCARECROW
5b3h_A7e-7024361513377Protein SCARECROW
5b3h_D7e-7024361513377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503135.10.0DELLA protein GAI
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1S2YD910.0A0A1S2YD91_CICAR; DELLA protein GAI
STRINGXP_004503135.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein