PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004502668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Nin-like | ||||||||
Protein Properties | Length: 251aa MW: 29442.8 Da PI: 6.7886 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 72.5 | 5.4e-23 | 144 | 191 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++d++k+F+ pi+ AAk L+v+lT+LKr+CR++ I RWPhRk+ksl XP_004502668.1 144 LEFDDIKKHFNVPITLAAKRLNVGLTLLKRRCRELKITRWPHRKLKSL 191 899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.006 | 127 | 212 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.5E-21 | 144 | 191 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDFFTEHQIT QGSNFFYNAQ PQQIDTPEDK IMDISPLDGF VDFNWETEFQ RNELYISDEF 60 KDLENFNFDF NLPHLEQDFE VDQKPLNAVL PQLEHCNDEG VSGFIENGFV SCVKKEEEEE 120 EKEKPLSLAL LSGCSSKKKR SSLLEFDDIK KHFNVPITLA AKRLNVGLTL LKRRCRELKI 180 TRWPHRKLKS LVLLIDNLKK MGLADEVVKL EKHKKMLEKL PGIELNEEIK RLRQACFKAN 240 YKRRRLIGSR P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 245 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004502668.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502668.1 | 0.0 | protein RKD4 | ||||
TrEMBL | A0A1S2YDP1 | 0.0 | A0A1S2YDP1_CICAR; protein RKD4 | ||||
STRING | XP_004502668.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-32 | RWP-RK domain-containing protein |