PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502608.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 351aa    MW: 39614.2 Da    PI: 4.4492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19109159155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  +++a+ kl+g
  XP_004502608.1 109 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTFETAEEAAMVYDNAAIKLRG 159
                     59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.07E-33109166No hitNo description
SMARTSM003802.1E-38110173IPR001471AP2/ERF domain
PfamPF008474.5E-12110159IPR001471AP2/ERF domain
PROSITE profilePS5103223.617110167IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21110166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-30110166IPR001471AP2/ERF domain
PRINTSPR003672.4E-10111122IPR001471AP2/ERF domain
PRINTSPR003672.4E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEQNNNKSIL CKYTEHQTVT KKLIKTTKTV NNKTVEPRVV RISVTDPDAT DSSSDEEGEQ  60
TFFRNRTKRY INRIEIETTV KPAVNRKRPA GETSTVKRPA KVPAITTGKK FRGVRQRPWG  120
KWAAEIRDPA RRVRLWLGTF ETAEEAAMVY DNAAIKLRGP DALTNFITPP QKETSPVKPV  180
MKVVVDGETE TEAEPQASRY CYDSGECIPV SSPTSVLNFR SSNCNSGESQ ESEETSEVSE  240
VFRECEGETN LFDETAQFYQ MDMPTWDDVF NFQTPEFSLM FEEENCKMFG ENTTPFLCGD  300
DLNDSIVLAD SLIDFDKACF PSSPSPSSSF CQVEDDFFQD ILLSSDPLVL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23108166362ATERF1
3gcc_A1e-23108166362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368RNRTKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502608.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1S2YC180.0A0A1S2YC18_CICAR; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_004502608.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-51cytokinin response factor 4