PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004502598.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 330aa MW: 36790.1 Da PI: 4.6162

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004502598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	3.8e-37	50	104	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++ XP_004502598.1 50 PNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRR 104 58**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	39	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-32	50	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.565	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MFPQRHNNIS SIELEQMLHL LSSSSSSPIP LSTSMDKSNS RWKPNIEIAP NCPRCASTNT 60 KFCYYNNYSL SQPRYFCKGC RRYWTKGGSL RNVPVGGGCR KTRRGKTIRN SHTDRLSANG 120 SEDDADGHHH QSQNNGSRDI DMALVFAKFL NQNPTNSDHG EEFENENEPI NNGSPSSNNI 180 NNLSTPESVE TENDAVVHPQ NPFDADSVAL NGELSLSGID EFEGFLGVDE DVVQDVLWSH 240 SDANANVNAM MMVSSSNYTW QQPSSMMQMD ELEYSMPLPI LNENGTHDDQ LLSHTFNSNS 300 TTVNLINDSW NSWGSFDLST MEVFSSSSRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004502598.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502598.1	0.0	dof zinc finger protein DOF5.1
TrEMBL	A0A1S2YC21	0.0	A0A1S2YC21_CICAR; dof zinc finger protein DOF5.1
STRING	XP_004502598.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-35	Dof family protein