PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502460.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bZIP
Protein Properties Length: 363aa    MW: 41239.9 Da    PI: 6.8868
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.16.7e-1278112438
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                     +k +rr+++NReAAr+sR+RKka++++Le    +L
  XP_004502460.1  78 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKL 112
                     6889************************9854444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-774122No hitNo description
SMARTSM003387.9E-875146IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.89877121IPR004827Basic-leucine zipper domain
CDDcd147081.60E-2179131No hitNo description
SuperFamilySSF579591.44E-779122No hitNo description
PfamPF001701.5E-879115IPR004827Basic-leucine zipper domain
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141441.0E-31165239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNSPSAQFVS SRRMSVYDPI HQINMWGEGF KSNGNLSASL PLIDEADLKF DSSQSEDASH  60
GILGTSHKYD QEANRPIDKI QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLMQLEQELE  120
RTRQQGMYMG GGLDSNNMCF AGPVNSGITA FEMEYGHWVD EQNRQISEMR NALNAHIGDI  180
ELRILVEGMM NHYAEIYRMK SAAAKADVFY VMSGMWKTTA ERFFLWIGGF RPSELLKILG  240
PMIEPLTEQQ RLDIDNLGQS CQQAEDALSQ GMDKLRQTLA DSVAAGQFIE GTYIPQMASA  300
MEKLDALVSF VNQADHLRQE TLQQMSRILT IRQSARCLLA LGEYFQRLRA LSSLWSNRPR  360
EPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYSTGA0.0L28005.1 Glycine max TGACG-motif binding protein (STGA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502460.10.0transcription factor TGA1-like isoform X3
RefseqXP_012571863.10.0transcription factor TGA1-like isoform X3
RefseqXP_027190366.10.0transcription factor TGA4-like isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A1S3E8Y30.0A0A1S3E8Y3_CICAR; transcription factor TGA1-like isoform X3
TrEMBLA0A3Q7Y0190.0A0A3Q7Y019_CICAR; transcription factor TGA4-like isoform X1
STRINGXP_004502460.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-178bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]