PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004502275.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 27461.2 Da PI: 8.4453

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004502275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.6	1.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s XP_004502275.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.487	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-41	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-33	2	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.57E-45	2	76	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-33	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	15.043	89	179	IPR002487	Transcription factor, K-box
Pfam	PF01486	4.5E-26	91	173	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001708	Biological Process	cell fate specification
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0048481	Biological Process	plant ovule development
GO:0048833	Biological Process	specification of floral organ number
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCST 60 SSMLKTLERY QKCNYGAPEA NVATKEALEL SSQQEYLKLK ARYEALQRSQ RNLMGEDLGP 120 LSSKDLETLE RQLDSSLKQI RSTRTQFMLD QLGDLQRKEH LLCEANRALR QRMEGYQISS 180 LQLNLSAEDM GYDRHPGQTH GDALFQQLEC EPTLQIGYQN DPGSVVTAGP SMNNYMGGWL 240 P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	2e-45	75	173	1	101	Developmental protein SEPALLATA 3
4ox0_B	2e-45	75	173	1	101	Developmental protein SEPALLATA 3
4ox0_C	2e-45	75	173	1	101	Developmental protein SEPALLATA 3
4ox0_D	2e-45	75	173	1	101	Developmental protein SEPALLATA 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000269\|PubMed:9869431}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00605	ChIP-seq	Transfer from AT1G24260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004502275.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ223318	0.0	AJ223318.1 Pisum sativum mRNA for MADS-box transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004502275.1	1e-179	MADS-box transcription factor 1 isoform X2
Swissprot	O65874	1e-163	MTF1_PEA; MADS-box transcription factor 1
TrEMBL	A0A1S2YB80	1e-178	A0A1S2YB80_CICAR; MADS-box transcription factor 1 isoform X2
STRING	XP_004502274.1	1e-176	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-124	MIKC_MADS family protein

Publications ? help Back to Top
Buchner P,Boutin JP A MADS box transcription factor of the AP1/AGL9 subfamily is also expressed in the seed coat of pea (Pisum sativum) during development. Plant Mol. Biol., 1998. 38(6): p. 1253-5 [PMID:9869431]