PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501832.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 1554aa    MW: 175171 Da    PI: 8.5639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001714381463123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      y+C    C++sF +k +L++H r+ +
  XP_004501832.1 1438 YQCDieGCTMSFESKQELVHHKRNiC 1463
                      99********************9877 PP
2zf-C2H212.80.0003514631485323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      Cp   Cgk F ++ +L++H r+H
  XP_004501832.1 1463 CPvkGCGKKFFSHKYLVQHRRVH 1485
                      9999*****************99 PP
3zf-C2H213.40.0002215211547123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C   dCg++F+  s++ rH r+  H
  XP_004501832.1 1521 YVCAepDCGQTFRFVSDFSRHKRKtgH 1547
                      899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005458.5E-161960IPR003349JmjN domain
PROSITE profilePS5118314.6862061IPR003349JmjN domain
PfamPF023758.0E-142154IPR003349JmjN domain
SMARTSM005582.1E-48176345IPR003347JmjC domain
PROSITE profilePS5118433.458176345IPR003347JmjC domain
SuperFamilySSF511979.34E-26190359No hitNo description
PfamPF023731.4E-35209328IPR003347JmjC domain
Gene3DG3DSA:3.30.160.603.6E-414291460IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.914381460IPR015880Zinc finger, C2H2-like
SMARTSM003550.004514611485IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.50814611490IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-514621489IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014631485IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-914771519No hitNo description
Gene3DG3DSA:3.30.160.602.7E-814901515IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001614911515IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82414911520IPR007087Zinc finger, C2H2
PROSITE patternPS00028014931515IPR007087Zinc finger, C2H2
SuperFamilySSF576676.82E-815091543No hitNo description
Gene3DG3DSA:3.30.160.608.4E-915161543IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.115211547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13615211552IPR007087Zinc finger, C2H2
PROSITE patternPS00028015231547IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1554 aa     Download sequence    Send to blast
MAVSEPNGDV FPWLKSMAVA PEYRPTASEF EDPIGYIFKI EKEASKYGIC KIIPPFPPSP  60
KKTAIANLNR SLPNSTFTTR QQQIGFCPRK SRPVKRPVWQ SGDHYTFSEF EAKAKWFEKC  120
YMKKHNKKGI NGSNALETET LFWKATVDKP FSVEYANDMP GSAFSAKCRH VGEAASVAHS  180
AWNMRGVSRA KGSLLRFMKE EIPGVTSPMV YLAMLFSWFA WHVEDHDLHS LNYLHMGASK  240
TWYGVPRDAA VAFEDVVRVH GYGGQINPLV TFAILGEKTT VMSPEVFISA GVPCCRLVQN  300
AGEFVVTFPR AYHTGFSHGF NCGEAANIAT PEWLRVAKDA AIRRASINYP PMVSHFQLLY  360
DLALALCSRV PGGISVKPRS SRLKDKKKGE GEAVIKELFV QDVLQNNDLL HVLGKEASVV  420
LLPRSSVDIP ICSKLRVGSQ RVKVNPGFSI NVCNSEGMNS SKGFVSDDLV FNRNRGIAQE  480
KNLCSVKDKF TLLCDGKGIS SSEANGDTSP SSSKQLQRDS ESETSQEDGL PDQRLFSCVT  540
CGLLSFSCVA IVQPREPAAR YFTSSDCSIF SDWAVGSGVP VAREEANIPE PSMYTGWTKK  600
NAKEKSLNTE GGNGNTALAL LASAYGNSSD SEEDAVDNHE LNAIKSTSER LPSNFRDSHA  660
NSMTRLDKDD ILSESSSYEA NRSECNFGYQ PCDKSFEEQD YKITSGVAFE NTRAMPYSAT  720
FSSPNTNDAE KNALLAPQCD EDSSRMHVFC LEHAAEAEQQ LRPIGGSRIL LLCHPDYPNI  780
EAEAKLVAED LGIDYMWKSI SYRHGTKEDE ERVQSALDCE EAIPGNGDWA VKLGINLFYS  840
ANLGRSPLYS KQMPYNSVIY YAFGCSSPTS SPIEPKVYQR RDSKQKKVVA GKWCGKVWMS  900
NQVHPLLAKR DYEDVEDEKS VHGLIIPDEK IERSRRTPKT ETAITKSGSK RKTTSGSGRT  960
RKGRFVEKHV VLDSSAEDKL NPQQRQTLRS KQARCVEKDG TDFLSDCSPP YHRRNPISKQ  1020
TNCTESDAVS DDLFDDDDHM RHRRGFNVKK AKFIDNDVVS DGTVDYDTDC HQMGELRCKQ  1080
IEDTERDSIS EDSLDVGSFQ LHRKTSRSKN GNFINEEVAI FDDQMENSCQ KQKKRIPKSR  1140
QGKSLVEKDS VISDDQLELN TQKQRRRNPI STKAKYLAEE DIISDDQTEG NCRKYQRRTV  1200
RVRQAKCIIG EYVMSDDQLD SPFQKQKTSI SRRKNKGIDR EVKNVISDDQ LEDHFQQQQR  1260
RIPRSRHTKQ AEKEITDDSA DNNAHLPHRT SKRKKAKCKD EDGMSLDDEM EDDSLQQHKR  1320
NLPSKQSKRK TLKQMKQSKS LQMKNQTPQQ VKSEAAQQIK QPSHLRSKQS GNSREVSLDM  1380
DEEEEGGPST RLRKRVPKAE ESEEKPKDKQ TKRKRAKDAA AAKVSAGNAK AKDGEEEYQC  1440
DIEGCTMSFE SKQELVHHKR NICPVKGCGK KFFSHKYLVQ HRRVHEDDRP LKCPWKGCKM  1500
SFKWAWARTE HIRVHTGARP YVCAEPDCGQ TFRFVSDFSR HKRKTGHLAK KNRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A7e-7993664353Transcription factor jumonji (Jmj) family protein
6ip4_A7e-7993664353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113921414RKRVPKAEESEEKPKDKQTKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501832.10.0lysine-specific demethylase JMJ705-like isoform X1
TrEMBLA0A1S2YA950.0A0A1S2YA95_CICAR; lysine-specific demethylase JMJ705-like isoform X1
STRINGXP_004501832.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6