PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004501802.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27201.6 Da PI: 9.4157 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.5e-11 | 165 | 205 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_004501802.2 165 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVNYVKLLQ 205 9******************97.....8****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-14 | 154 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.301 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-12 | 160 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-11 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.00E-9 | 164 | 201 | No hit | No description |
Pfam | PF00010 | 2.1E-8 | 165 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSQENNHSLA DTNYFFNCFD HVVANNSDIS ENFDHGDQVQ PIVFPTKQLK LKRLLGVSEL 60 EDKIHSCVNP KKKPRTSKDV QRCMKKAEYS KKSKKIDRNG NKAEETNASI DGHSSSGYTS 120 EEHNVYEENS GRVTSASKLT VALNSNGKIR ANRGSATDPQ SLYARKRRER INERLKTLQN 180 LVPNGTKVDI STMLEEAVNY VKLLQLQIKL LSSDELWMYA PIAYNGLDIG INLSQKIYPP 240 P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 75 | PKKKPRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004501802.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU443959 | 1e-78 | GU443959.1 Trifolium repens clone BAC 11l07 cyclin d, calcium ATPase, E3 ubiquitin ligase, galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, and cysteine protease genes, complete cds; and unknown genes. | |||
GenBank | GU443962 | 1e-78 | GU443962.1 Trifolium repens clone BAC 38j22 galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, transcription initiation factor, and proteinase inhibitor genes, complete cds; and unknown genes. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501802.3 | 1e-179 | transcription factor bHLH139 | ||||
TrEMBL | A0A1S2YA67 | 1e-177 | A0A1S2YA67_CICAR; transcription factor bHLH139 | ||||
STRING | XP_004501802.1 | 1e-178 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 1e-44 | ROOT HAIR DEFECTIVE 6-LIKE 2 |