PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501739.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 331aa    MW: 37387.9 Da    PI: 7.6201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10160207455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  XP_004501739.1 160 SHSLAERVRREKISERMKKLQQLVPGC----DKVTGKALMLDEIINYVQSLQ 207
                     8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.40E-11154211No hitNo description
SuperFamilySSF474592.09E-17154224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.961156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17156224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAAFSYQYHP FLVDSAFMLN INTGPPPSQF HLHQETSFNM DTNCVDETSK ITTNDNNEPF  60
VVKNLSPQSS MVLDKLQIGD EQTTHIVTTM DKKKRTRNNG PSSSNPQSKE MEAEGRKKKQ  120
KKSKEEEKTK AEKKDQRKCL EEPPTGYIHV RARRGQATDS HSLAERVRRE KISERMKKLQ  180
QLVPGCDKVT GKALMLDEII NYVQSLQNQV EFLSMKLASV NPMIYDLATD LDTFLGRTEK  240
LNSLASPSPL SSVSVSHCNS PKQATTFADP TTNIFQTATD YLLDNSASIF LQGQRSNVVS  300
EDGSNFWDTE DQRQKFLLHS HGFSNNLCSF H
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1375311e-149BT137531.1 Medicago truncatula clone JCVI-FLMt-15H6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501739.10.0transcription factor bHLH137
SwissprotQ93W883e-59BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A1S2YA220.0A0A1S2YA22_CICAR; transcription factor bHLH137
STRINGXP_004501739.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]