PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004501729.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 227aa MW: 25974.5 Da PI: 9.9816

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004501729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.7	1.2e-45	14	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeelv +yLk k+ + +l++ ++i+e+++++++P+dLp ++ +e++ y+Fs++++ky++g+r nr+tksgyWkatg++k+v++ XP_004501729.1 14 LPPGFRFQPTDEELVFQYLKCKILSYQLPA-SIIPEINVCNYDPSDLPGNY--GEQDRYYFSSKETKYRNGNRMNRTTKSGYWKATGSEKKVIRI 105 79**************************.89***********554..77899******************************997 PP NAM 96 .......kgel..vglkktLvfykgrapkgektdWvmheyrl 128 + + g++k+Lvfykg++p+g+++dW+mheyrl XP_004501729.1 106 sssisnnN--VglAGIRKSLVFYKGKSPNGSRSDWIMHEYRL 145 55554433..1569************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-52	11	172	IPR003441	NAC domain
PROSITE profile	PS51005	50.672	14	172	IPR003441	NAC domain
Pfam	PF02365	7.0E-24	15	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MENVKFIKNG ISKLPPGFRF QPTDEELVFQ YLKCKILSYQ LPASIIPEIN VCNYDPSDLP 60 GNYGEQDRYY FSSKETKYRN GNRMNRTTKS GYWKATGSEK KVIRISSSIS NNNVGLAGIR 120 KSLVFYKGKS PNGSRSDWIM HEYRLVNVES NSSHQKYVKE IGDWVVCRIF MKKRRNVDKY 180 SVSIMNQPRF FDFMRVHNAA PGPMITSSSS STSTEVSSSD QTSGYIC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-43	14	173	20	169	NAC domain-containing protein 19
3swm_B	1e-43	14	173	20	169	NAC domain-containing protein 19
3swm_C	1e-43	14	173	20	169	NAC domain-containing protein 19
3swm_D	1e-43	14	173	20	169	NAC domain-containing protein 19
3swp_A	1e-43	14	173	20	169	NAC domain-containing protein 19
3swp_B	1e-43	14	173	20	169	NAC domain-containing protein 19
3swp_C	1e-43	14	173	20	169	NAC domain-containing protein 19
3swp_D	1e-43	14	173	20	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004501729.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501729.1	1e-169	NAC domain-containing protein 83
Swissprot	Q9FY93	3e-67	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1S2YA12	1e-168	A0A1S2YA12_CICAR; NAC domain-containing protein 83
STRING	XP_004501729.1	1e-168	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-67	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]