PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004501557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 18430.6 Da PI: 9.4291 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.3e-18 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g XP_004501557.1 31 PYRGIRKRK-WGKWVAEIREP---NKRSRIWLGSYITPVAAARAYDTAVFYLRG 80 69****999.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.313 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-36 | 31 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-20 | 31 | 89 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.11E-27 | 32 | 90 | No hit | No description |
PRINTS | PR00367 | 4.4E-12 | 32 | 43 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 32 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-30 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-12 | 70 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEQERDCCST IIRNRTNNNN AQEKHKQQEK PYRGIRKRKW GKWVAEIREP NKRSRIWLGS 60 YITPVAAARA YDTAVFYLRG PSARLNFPEL LFQDDEENNG DDGSVQQGDM SADLIRKKAT 120 RVGARVDALQ TALQDSTRST STQFMSHVKP DLNEYPKPED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 30 | 88 | 4 | 63 | ATERF1 |
3gcc_A | 4e-15 | 30 | 88 | 4 | 63 | ATERF1 |
5wx9_A | 6e-15 | 32 | 89 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004501557.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501557.1 | 1e-118 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 9e-52 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A1S2Y9L6 | 1e-117 | A0A1S2Y9L6_CICAR; ethylene-responsive transcription factor RAP2-1-like | ||||
STRING | XP_004501557.1 | 1e-118 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 4e-53 | related to AP2 1 |
Publications ? help Back to Top | |||
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