PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500780.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family DBB
Protein Properties Length: 243aa    MW: 27062.4 Da    PI: 6.2724
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.5e-08444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ +e+ +++lfC +++  lC+ C l++H+       Ht+
  XP_004500780.1  4 QCDVCEKVQASLFCPSDEAALCHGCDLSIHHAnklatkHTR 44
                    7******88********************744478878875 PP
2zf-B_box27.37.4e-095692438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    + C+ ++ek+   fC++++  +C++C l++H+   Ht
  XP_004500780.1 56 PLCDICQEKRGYVFCQEDRAIVCRECDLSIHRAneHT 92
                    78*****************************768865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000212.99E-7347No hitNo description
PfamPF006433.4E-5444IPR000315B-box-type zinc finger
SMARTSM003361.2E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.92653100IPR000315B-box-type zinc finger
SMARTSM003364.2E-1353100IPR000315B-box-type zinc finger
CDDcd000216.11E-956100No hitNo description
PfamPF006434.5E-75692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIQCDVCEK VQASLFCPSD EAALCHGCDL SIHHANKLAT KHTRFSLIHL HSKEFPLCDI  60
CQEKRGYVFC QEDRAIVCRE CDLSIHRANE HTEKHNRFLL SGVKLSSNSL DPESSSSTNI  120
IERSVSNENG SSYGNKVEEN MGSESGSVST SSISEYLIET IPGYCFEDFL DASFAPNAFC  180
KNNCSEFKDQ DIHVSKYLFP QVTCVPLAQV QSTQLTNPIP LNLPRIDSTV GVKEIPGKSR  240
HSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196062e-49CU019606.6 M.truncatula DNA sequence from clone MTH2-77H1 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500780.11e-180B-box zinc finger protein 20-like
SwissprotQ9LQZ71e-55BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A1S2Y9G31e-179A0A1S2Y9G3_CICAR; B-box zinc finger protein 20-like
STRINGXP_004500780.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-52salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]