PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23575.6 Da PI: 4.8665 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 23 | 73 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa +l+g XP_004500566.1 23 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALICLKG 73 59*****998.**********9...336***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.14E-20 | 23 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-28 | 24 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 24 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.601 | 24 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 24 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-18 | 24 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVKLESKKVK KEQLSKPISD SKKKYKGVRM RSWGSWVSEI RAPNQKTRIW LGSYSTPEAA 60 ARAYDAALIC LKGSSATNLN FPLTCSHYNI PQDTNNVTVM SPKSIQRVAA AAANSFIDNN 120 VNVNNINTPS SSMASSPSDQ IDDDVSLMSS FDQANESMAM MELESWYGLE GLQSPKYIDQ 180 MLLNASFFDV DSSLLLDDLY EESEIRLWNF C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 12 | 82 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500566.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146757 | 4e-72 | BT146757.1 Medicago truncatula clone JCVI-FLMt-5M3 unknown mRNA. | |||
GenBank | CR538723 | 4e-72 | CR538723.1 M.truncatula DNA sequence from clone MTH2-27D24 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500566.1 | 1e-155 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 2e-45 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A1S2Y8L1 | 1e-154 | A0A1S2Y8L1_CICAR; ethylene-responsive transcription factor ERF014 | ||||
STRING | XP_004500566.1 | 1e-154 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 5e-42 | ERF family protein |
Publications ? help Back to Top | |||
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