PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499688.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 623aa    MW: 72174.2 Da    PI: 8.7782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07414458148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r rWT++E e + +  + +G++ W+ Ia  +g  +++ q+k+ w+ ++
   XP_004499688.1 414 RCRWTPDELEFIRKSQEIHGSD-WRPIADALG--KSRFQVKDAWRRLK 458
                      679*******************.********8..8*******999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-6340404IPR009057Homeodomain-like
SMARTSM007178.1E-5340411IPR001005SANT/Myb domain
CDDcd001670.00724343404No hitNo description
PROSITE profilePS500904.484343404IPR017877Myb-like domain
SuperFamilySSF466894.26E-9388470IPR009057Homeodomain-like
PROSITE profilePS500906.841409458IPR017877Myb-like domain
SMARTSM007172.6E-6413460IPR001005SANT/Myb domain
CDDcd001678.72E-4416458No hitNo description
Gene3DG3DSA:1.10.10.601.5E-7416468IPR009057Homeodomain-like
PfamPF139214.9E-10417475No hitNo description
PROSITE profilePS500906.829459528IPR017877Myb-like domain
SMARTSM007174.4463530IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-5469528IPR009057Homeodomain-like
PROSITE profilePS500906.934530583IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MKALSKKNKR TKDEEGETNG VDNVVDLPLA KSNDDLHLVK SNKSEDDEQG KKMKKKKKKL  60
SEKRKHKEYN EFQSNACESD DQGKMKKKIR LCDEKKLKEG DDFRINDGED GEEGKKIKKK  120
KKKRSEESKH KEYNEIESNE GEDGKQGKKI KKKKRSEESR DKVCNEIKSN ECEDDDQGNK  180
MKKEKLIEGS KLNECNDFRS SEGNDGVQDK KKKKKKKLSE ESIHKEHDKF KSNECGDDGH  240
GKKKKKKKKK KSIEGEDDGD QGKTMKKKEL NHNSKSMESN DFNSNDSDAK ANDQGKKRKK  300
KKVAESVTGE TPKSSKGRPW KPKRVTFSDQ VEFCCDGLLR GKRFTPEEDE KIKAAVNDYI  360
DSHCLGENGL DMILHCGSHP EIRGCWKEIA EVLPERPVRS VYERGHVLLE NGQRCRWTPD  420
ELEFIRKSQE IHGSDWRPIA DALGKSRFQV KDAWRRLKFT NLKQGQWSQD EYQTLFDLVN  480
LDLRTRATEP YRKSMHGMLR DNISWEAIGN KLSTRNSSFC CKKWYEQLTT PLVASGEWCD  540
TDDYRLISTL YTLDACCRDD VEWDDLLEHR SGDVCRLRWD QMVQHIGEHA GKSFIEQVEV  600
LAKRFCPDLL EAREAFDNKP VIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208217DKKKKKKKKL
2241250KKKKKKKKKK
3242250KKKKKKKKK
4295299KKRKK
5295301KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499688.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A1S2Y7840.0A0A1S2Y784_CICAR; cyclin-D-binding Myb-like transcription factor 1
STRINGXP_004499688.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-115MYB_related family protein