PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499407.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 500aa    MW: 55269.8 Da    PI: 5.6273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.51.8e-1051174931374
            GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg..dpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 
                     lv+lL++ Aea++   ++  la+ +L rl+el+s+++  ++m+RlaayfteAL+  l +  + +  +  +p+  +++n+ ++laa++l++++sP+
  XP_004499407.1 117 LVHLLMAGAEALTGstKSRDLARVILVRLKELVSQQAhgSNMERLAAYFTEALQGLLEGaGGAHNNNHHHPQGGPHDNQNDTLAAFQLLQDMSPY 211
                     689********9872255559***********77765338*******************4455566666888888899***************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                     +kf+h+taNqaIleav++e+rvH+iD+di++G+QW++L+qaLas ++g p+lRiT++++  +g  s  +++etg+rL++fA++lg pf+f+    
  XP_004499407.1 212 VKFGHFTANQAILEAVAHERRVHVIDYDIMEGVQWASLIQALASNKNG-PHLRITALSRTGTGrrSIATVQETGRRLTSFAASLGQPFSFHHCRL 305
                     ********************************************7666.9*********888799999************************999 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     ++ e++++++L++ +gEal+ n++l+l +l  +  ++     ++L+  k l+P++v++ve+e+    + F+erf+++l++ysa+fdslea++p +
  XP_004499407.1 306 DSDETFRPSSLKLVRGEALVFNCMLNLPHLSYRAPDSVA---SFLNGAKALKPRLVTLVEEEVGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQ 397
                     9****************************9855555555...9**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsv 370
                     +++r+ vEr+++g++i   +a   +     +e+ ++W e+l++aGF+ vp+s  + +qaklll  ++ dgyrvee    s+ lvl Wk+r+L+s+
  XP_004499407.1 398 NRARALVERVFFGPRIAGSLARIYRT--GGEEERRSWGEWLGAAGFRGVPVSFANHCQAKLLLGLFN-DGYRVEEVgvgSNKLVLDWKSRRLLSA 489
                     *********************99876..777888*********************************.******88777**************** PP

            GRAS 371 SaWr 374
                     S+W+
  XP_004499407.1 490 SVWT 493
                     ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.96591471IPR005202Transcription factor GRAS
PfamPF035146.2E-103117493IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEMDMDTIHD LDFSGHSTLT NTPTSDEDYG CNWNHWSPIV NWDTFTGTQD DFHHLMDSII  60
DDRTTVVEQL SPSTTTATTT TTTTTTEEEE DEEEETEIKT EKTAAQAAGD DLKGLRLVHL  120
LMAGAEALTG STKSRDLARV ILVRLKELVS QQAHGSNMER LAAYFTEALQ GLLEGAGGAH  180
NNNHHHPQGG PHDNQNDTLA AFQLLQDMSP YVKFGHFTAN QAILEAVAHE RRVHVIDYDI  240
MEGVQWASLI QALASNKNGP HLRITALSRT GTGRRSIATV QETGRRLTSF AASLGQPFSF  300
HHCRLDSDET FRPSSLKLVR GEALVFNCML NLPHLSYRAP DSVASFLNGA KALKPRLVTL  360
VEEEVGSVVG GFVERFMDSL HHYSAVFDSL EAGFPMQNRA RALVERVFFG PRIAGSLARI  420
YRTGGEEERR SWGEWLGAAG FRGVPVSFAN HCQAKLLLGL FNDGYRVEEV GVGSNKLVLD  480
WKSRRLLSAS VWTCSSESDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-5313849637381Protein SCARECROW
5b3h_D7e-5313849637381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499407.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5345030.0KC534503.1 Cicer arietinum nodulation signaling pathway 2 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499407.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLW5RSD70.0W5RSD7_CICAR; Nodulation-signaling pathway 2 protein
STRINGXP_004499407.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-134GRAS family protein
Publications ? help Back to Top
  1. Ali L, et al.
    Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway.
    Theor. Appl. Genet., 2014. 127(2): p. 481-8
    [PMID:24247237]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]