PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499041.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 163aa    MW: 18861.6 Da    PI: 10.1222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-183685255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  XP_004499041.1 36 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYITPIAAARAYDTAVFYLRG 85
                    69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.7733693IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-203694IPR016177DNA-binding domain
SMARTSM003801.1E-353699IPR001471AP2/ERF domain
PRINTSPR003671.3E-113748IPR001471AP2/ERF domain
PfamPF008471.6E-103785IPR001471AP2/ERF domain
CDDcd000181.65E-273795No hitNo description
Gene3DG3DSA:3.30.730.102.4E-293794IPR001471AP2/ERF domain
PRINTSPR003671.3E-117595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MIGIVGREYS SSSMNSRSNN NKEMKMKMKE KKDMKPYRGI RMRKWGKWVA EIREPNKRSR  60
IWLGSYITPI AAARAYDTAV FYLRGPSAHL NFPELLLKDQ EEEKNEQGCC SIKQHDNMSA  120
DSIRKKATQV GARVDALQIS LHHHSSFNSL KPDLNEFPKP EDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-153593463ATERF1
3gcc_A4e-153593463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499041.11e-121ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC301e-48RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A1S2Y4411e-119A0A1S2Y441_CICAR; ethylene-responsive transcription factor RAP2-1
STRINGXP_004499041.11e-120(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.14e-50related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]