PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499006.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 370aa    MW: 41938.2 Da    PI: 4.4313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102833231055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_004499006.1 283 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 323
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-14273332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-11282327No hitNo description
PfamPF000109.2E-8283323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDSLGASFLD GEWDFFRKMF ANEDHEYYSS QFLSQNSLLQ EENDGLNNET QSTFSSIEAC  60
ENEPMIYSFD HDHISNSQYI SQENSYGSKC SDIDNTNYYF SYDGNVLANN INTFISSMDF  120
CADDKFFASS ITPFNEIVME ESVNMNEDAA SDDRLEKNDY STQIMQLKRK LDVIDVEVPI  180
EEKIINNKAD NQKKKPRVSK DGCMKNARCK KNQKLGSNEE EREESNRGSI NGHSSSSNIS  240
DEDNVSQENS GGTTSGSKSA LNSNGKTRAS RGSATDPQSL YARKRRERIN ERLRILQNLV  300
PNGTKVDIST MLEEAVNYVK FLQLQIKVYY TIGYIMELLS SDDMWMYAPL AYNGLDIGLN  360
LNNLKSSLPL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189974.10.0transcription factor bHLH85-like
TrEMBLA0A3Q7X8K50.0A0A3Q7X8K5_CICAR; transcription factor bHLH85-like
STRINGXP_004499006.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-34ROOT HAIR DEFECTIVE 6-LIKE 2