PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498814.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 272aa MW: 30856.9 Da PI: 8.0075 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.7e-30 | 129 | 186 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cp kkkv+rs edp++++ tYegeHnh XP_004498814.1 129 MDGYQWRKYGQKVTKDNPSPRAYFRCSHApSCPIKKKVQRSLEDPTILVATYEGEHNH 186 6***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.04 | 123 | 189 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-25 | 125 | 188 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.8E-28 | 125 | 187 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-33 | 128 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-25 | 130 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEFSTCVDTS LNLNFNVPSI HKDEVLVEEL NRLNCENKRL NETLTNMCEN YEAMQKHLSQ 60 LMNQDFENQT QQSRKRKFGI KGININNECS NVTDDESLIK RSCRDVSSPN KAYKVLFKTE 120 AFNNSLYVMD GYQWRKYGQK VTKDNPSPRA YFRCSHAPSC PIKKKVQRSL EDPTILVATY 180 EGEHNHGHKK SEMSLVSSQS EESPVVSVHV SSPKPIIQKT CPTIKDDLVD NVPKSSMQHF 240 LVQQMANSLT KDPNFTAALA TAISGRILGS DF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-19 | 130 | 186 | 19 | 74 | Probable WRKY transcription factor 4 |
2ayd_A | 1e-19 | 128 | 186 | 14 | 71 | WRKY transcription factor 1 |
2lex_A | 1e-19 | 130 | 186 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498814.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498814.2 | 0.0 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1S2Y4T0 | 0.0 | A0A1S2Y4T0_CICAR; probable WRKY transcription factor 40 | ||||
STRING | XP_004498814.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 6e-69 | WRKY DNA-binding protein 40 |