PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 323aa MW: 38122.7 Da PI: 8.9264 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.4 | 2.2e-12 | 12 | 103 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv ++++ + + l +p +f+ +h +g++ ++ +tl+ ++ +Wev +k+ + + + kGWkeF++ L + fvvFk++++s f + XP_004498213.1 12 FFKVILQKSIQEGK-LKVPQSFVMKHwQGIT-NP--ITLRLPNMTQWEVLW--EKTCDYdVCFCKGWKEFANYLSLSDSQFVVFKYQENSHF--N 98 77887776666665.9**********86663.54..9999999******99..77777779999**********************999999..7 PP EEEE- CS B3 94 vkvfr 98 v vf+ XP_004498213.1 99 VIVFD 103 77776 PP | |||||||
2 | B3 | 48.2 | 2e-15 | 216 | 304 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ff +++ + ++++lv+p++f + h e++ t+ ++r+W+v l+ ++++ +++l++GW++F + n++k gD++vF l++ + XP_004498213.1 216 FFICVIHKTYIERDLLVIPRDFSKIHlH--RMEGRNATIFVDQNRTWNVDLKLTRND-QFTLSGGWNKFRHHNNVKYGDVCVFILNKIkGTV 304 677778899999**********977742..34445566666689*******888886.689**********************987643333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.59E-18 | 7 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.812 | 11 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.98E-11 | 11 | 103 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-17 | 11 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.3E-9 | 12 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-6 | 12 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-17 | 210 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-17 | 212 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.099 | 216 | 314 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-13 | 216 | 304 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-11 | 216 | 314 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.10E-12 | 231 | 312 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MSSQQFDHGV HFFKVILQKS IQEGKLKVPQ SFVMKHWQGI TNPITLRLPN MTQWEVLWEK 60 TCDYDVCFCK GWKEFANYLS LSDSQFVVFK YQENSHFNVI VFDKCGLEIT YPLRETSEKC 120 EDVDESDYSL EIIEDPSSSR RKRPKSPSSS SKIYKKVKII SKEQKECKHE KSKVLAHARF 180 YNSKHMDNGS SCDNILKRSR ILHEKVKNEF SCEKDFFICV IHKTYIERDL LVIPRDFSKI 240 HLHRMEGRNA TIFVDQNRTW NVDLKLTRND QFTLSGGWNK FRHHNNVKYG DVCVFILNKI 300 KGTVSFQVVI FSLEKEITTP YFE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498213.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498213.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080-like isoform X3 | ||||
TrEMBL | A0A1S2Y269 | 0.0 | A0A1S2Y269_CICAR; B3 domain-containing protein LOC_Os12g40080-like isoform X3 | ||||
STRING | XP_004513365.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 2e-17 | B3 family protein |