PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498212.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 325aa    MW: 38310 Da    PI: 8.9264
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.3e-1212103198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkv ++++  + + l +p +f+ +h +g++ ++  +tl+ ++  +Wev    +k+ +  + + kGWkeF++   L +  fvvFk++++s f  +
  XP_004498212.1  12 FFKVILQKSIQEGK-LKVPQSFVMKHwQGIT-NP--ITLRLPNMTQWEVLW--EKTCDYdVCFCKGWKEFANYLSLSDSQFVVFKYQENSHF--N 98 
                     77877776666665.9**********86663.54..9999999******99..77777779999**********************999999..7 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v vf+
  XP_004498212.1  99 VIVFD 103
                     77776 PP
2B348.22e-15218306190
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     ff   +++ + ++++lv+p++f + h      e++  t+   ++r+W+v l+ ++++ +++l++GW++F + n++k gD++vF l++   + 
  XP_004498212.1 218 FFICVIHKTYIERDLLVIPRDFSKIHlH--RMEGRNATIFVDQNRTWNVDLKLTRND-QFTLSGGWNKFRHHNNVKYGDVCVFILNKIkGTV 306
                     677778899999**********977742..34445566666689*******888886.689**********************987643333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.61E-187104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.81211105IPR003340B3 DNA binding domain
CDDcd100174.10E-1111103No hitNo description
Gene3DG3DSA:2.40.330.103.6E-1711104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-612105IPR003340B3 DNA binding domain
PfamPF023622.3E-912103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-17212314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-17214314IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-11218316IPR003340B3 DNA binding domain
PfamPF023629.9E-13218306IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099218316IPR003340B3 DNA binding domain
CDDcd100172.12E-12233314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSSQQFDHGV HFFKVILQKS IQEGKLKVPQ SFVMKHWQGI TNPITLRLPN MTQWEVLWEK  60
TCDYDVCFCK GWKEFANYLS LSDSQFVVFK YQENSHFNVI VFDKCGLEIT YPLRETSEKC  120
EDVDESDYSL EIIEDPSSSR RKRPKSPSSS SKIYKKVKII SKEQKECKHE KSKVLAHARF  180
YNSKHMDMVA GSSCDNILKR SRILHEKVKN EFSCEKDFFI CVIHKTYIER DLLVIPRDFS  240
KIHLHRMEGR NATIFVDQNR TWNVDLKLTR NDQFTLSGGW NKFRHHNNVK YGDVCVFILN  300
KIKGTVSFQV VIFSLEKEIT TPYFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498212.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A1S2Y2B90.0A0A1S2Y2B9_CICAR; B3 domain-containing protein LOC_Os12g40080-like isoform X1
STRINGXP_004498212.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-17B3 family protein