PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497602.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 446aa    MW: 50865.7 Da    PI: 5.0186
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124e-35441362103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d++l+ +isws+ng sf v+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++         weF ++ F+kgkk+ll++
  XP_004497602.1  44 FLSKTFDLVDDPSLNPIISWSSNGVSFTVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEGFQKGKKHLLKN 129
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r++s+
  XP_004497602.1 130 IQRRRSS 136
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.99E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-5540133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.2E-3641133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNSKNEINSP KFSSAFDSSS FSMDFEPSVP VPMECLQMSP VPPFLSKTFD LVDDPSLNPI  60
ISWSSNGVSF TVWDPLEFAR IVLPRHFKHN NFSSFVRQLN TYGFRKIDTD KWEFFNEGFQ  120
KGKKHLLKNI QRRRSSQSQQ VGNYVGTSSS SSSSDAAGKS GVEIEVEKLK KERSVLMQEM  180
IELQQQQRVT ARHAGNVNQR LQSAEQRQKQ MVSFLAKLFQ NPDFLARLNR KKEQQRDIES  240
PRAKRKFVKQ HRNETETTSE ENLKDEKKIV RYQHQVSIEN SPHYVSHDLE RDMSEGVEDF  300
ASQIENISSD ELSAMHGIIG EGSFSFGLEE PLFKGKNVIS PNEEIVPKKF VNFPEEKGFQ  360
EFQCFKQEDI WDTNLNVGVA APSSGNELWE NPMNYGVLDF GVTSEMSESD IWDIGFGSLG  420
IDNWPVDEST LEIDSQVGKP KDDSPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-243913815125Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497602.10.0heat stress transcription factor A-3
TrEMBLA0A1S2Y0Z50.0A0A1S2Y0Z5_CICAR; heat stress transcription factor A-3
STRINGXP_004497602.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.18e-86heat shock transcription factor A3