PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497526.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TCP

Protein Properties

Length: 198aa MW: 21123.7 Da PI: 8.3552

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.6	1.3e-35	40	138	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 ++ ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a ++++s +ss+s +s + XP_004497526.1 40 TASRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAAPVSTVSPVSSSSVPSVSchvqpvssv 134 56789**********************************************************88888666555555555544444444444444 PP TCP 89 ...k 89 XP_004497526.1 135 gpgG 138 4441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-30	44	147	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.04	45	99	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTSELVIHTF SQPQTNKPST ATASDPNSQI STVKRTSTTT ASRSTKDRHT KVNGRGRRVR 60 MPPLCAARIF QLTRELGHRS DGETIEWLLR HAEPSIIAAT GTGTVPAAPV STVSPVSSSS 120 VPSVSCHVQP VSSVGPGGQG MFAAAMSQPQ PSCRLDLCQP PGMEYAAANG YRHMPFTALL 180 LQPTTAEENQ QEEALSEQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497526.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497526.1	1e-144	transcription factor TCP11
Swissprot	Q9SJK7	3e-43	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A1S2Y0X3	1e-142	A0A1S2Y0X3_CICAR; transcription factor TCP11
STRING	XP_004497526.1	1e-143	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-35	TCP family protein