PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497481.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family RAV
Protein Properties Length: 303aa    MW: 35143.7 Da    PI: 9.4864
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-093985254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++kGV   + +g W A+I+       ++r++lg+f ++ eAa a++ a  kl+
  XP_004497481.1 39 KFKGVVPQP-NGNWGAQIYAK-----HQRIWLGTFKSEIEAAMAYDSATIKLR 85
                    799998777.8*********3.....5**********99********999887 PP
2B385.25.9e-27159254185
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ltpsdv+k++rlv+pkk+a ++           +++ + ++++ ++d+  r W+++++y+k+s++yv+t+GW++Fvk+++L+++D++vF+l
  XP_004497481.1 159 FQKELTPSDVGKLNRLVIPKKHALTYfpcvcgnnvknDEECNYDVEVAFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLNAKDTIVFYL 253
                     99******************************99855444446789999********************************************97 PP

                     - CS
              B3  85 d 85 
                      
  XP_004497481.1 254 C 254
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-53985IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-143996IPR016177DNA-binding domain
CDDcd000185.02E-223996No hitNo description
Gene3DG3DSA:3.30.730.103.9E-163994IPR001471AP2/ERF domain
SMARTSM003808.5E-1839100IPR001471AP2/ERF domain
PROSITE profilePS5103216.7263994IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.3E-31154255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-27156259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-24157253No hitNo description
PfamPF023621.2E-23159254IPR003340B3 DNA binding domain
SMARTSM010199.0E-19159274IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265159274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MINSNSDVNG GYETSHSSNQ INYSTKRARH EVEVGRCEKF KGVVPQPNGN WGAQIYAKHQ  60
RIWLGTFKSE IEAAMAYDSA TIKLRSGESH RNFPWNNQTV QEPLFQSHYS LQIVLNMIRN  120
GTYQSIFSTF LNTQNQSHFT NNGNLGVKGE EEFSCTKLFQ KELTPSDVGK LNRLVIPKKH  180
ALTYFPCVCG NNVKNDEECN YDVEVAFYDK LMRLWKFRYC YWKSSQSYVF TRGWNRFVKD  240
KKLNAKDTIV FYLCEPINFT KGGERQVFSM IDVIYNNDGD RILRHSIENK RARGLRLFGV  300
SIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-27158254796B3 domain-containing transcription factor NGA1
5os9_B2e-27158254796B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497481.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497481.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6887e-93RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S2Y2L10.0A0A1S2Y2L1_CICAR; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_004497481.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-95RAV family protein