PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004497113.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 427aa MW: 47848.3 Da PI: 6.2746

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.7e-10	139	171	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +e k rr+++NReAAr+sR+RKka++++Le+ XP_004497113.1 139 EEHKSLRRLAQNREAARKSRLRKKAYVQQLENS 171 577999************************973 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-8	138	183	No hit	No description
SMART	SM00338	0.0044	138	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-7	139	180	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	140	184	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-7	142	184	No hit	No description
CDD	cd14708	2.29E-22	142	194	No hit	No description
PROSITE pattern	PS00036	0	145	160	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-28	230	304	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MQSFNATEPA SPFYSHSSFL FRGDEFNLNP TSFFDPHPSF QQHHTVDLTS SSVFGEKSSN 60 VAVVANNLQY GTFNTRIGSA SSGMADNTQN TEDTSTTDID DKNNNQCFST VSWCNGVENG 120 NLVVVDSKDQ CKTKDNNAEE HKSLRRLAQN REAARKSRLR KKAYVQQLEN SRVRLAQIEQ 180 ELQQVRQQGV FVASGVTGDH GHSVVGNGNS GTFAFDMDYA RWVDENQRLI NDIRSALNSQ 240 TGDNELHLLV DGVMAHYDEL YRLKSIGAKA DVFHILSGLW KTPAERCFMW LGGFRWSELL 300 KIVRNHVEAL TDQQLIGIYN LQHSSQQAED ALSQGMEALQ QSLSETLSSN ASGDVAEYMG 360 QMAMAMAKLS TLETFLHQAD LLRQQTLQQL RRILTAHQAA RALLVINDFI SRIRALNSLW 420 LACPKEY

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MQSFNATEPA SPFYSHSSFL FRGDEFNLNP TSFFDPHPSF QQHHTVDLTS SSVFGEKSSN  60
VAVVANNLQY GTFNTRIGSA SSGMADNTQN TEDTSTTDID DKNNNQCFST VSWCNGVENG  120
NLVVVDSKDQ CKTKDNNAEE HKSLRRLAQN REAARKSRLR KKAYVQQLEN SRVRLAQIEQ  180
ELQQVRQQGV FVASGVTGDH GHSVVGNGNS GTFAFDMDYA RWVDENQRLI NDIRSALNSQ  240
TGDNELHLLV DGVMAHYDEL YRLKSIGAKA DVFHILSGLW KTPAERCFMW LGGFRWSELL  300
KIVRNHVEAL TDQQLIGIYN LQHSSQQAED ALSQGMEALQ QSLSETLSSN ASGDVAEYMG  360
QMAMAMAKLS TLETFLHQAD LLRQQTLQQL RRILTAHQAA RALLVINDFI SRIRALNSLW  420
LACPKEY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497113.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497113.1	0.0	transcription factor TGA2.3-like isoform X1
Swissprot	Q9SX27	1e-148	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A1S2XZY6	0.0	A0A1S2XZY6_CICAR; transcription factor TGA2.3-like isoform X1
STRING	XP_004497113.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-141	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]