PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 32811.3 Da PI: 5.23 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.4e-11 | 226 | 266 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq XP_004496878.1 226 KRRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 266 8******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.342 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-10 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.55E-14 | 222 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.23E-11 | 225 | 270 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.5E-12 | 225 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-8 | 226 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDSSEQTCEE WSSLSGFYTA EEADFMDHLL DNFQVPQYHY GNFNLEIPST LWPGHQSTIM 60 MNNNTSHFPQ NADNSNTDFL SFLQATNSIA DTTNIGQEVI GDKNFQAHKV FEQVLLSESV 120 EEGVNNNLEN SGKRSRSLMK VQKNNGNVKS RKKLKSSFIS NTEEDVSPDL KEQNLSSEDD 180 EFNASQELKA GGSSISKNNS KAQKSKGKSK SNRGSSAIDP QGVYAKRRRE RINERLRILQ 240 SLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK LLSSDDLWMY SPIAYNGMNI GL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496878.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 6e-41 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496878.1 | 0.0 | transcription factor bHLH139-like | ||||
TrEMBL | A0A1S2XZB8 | 0.0 | A0A1S2XZB8_CICAR; transcription factor bHLH139-like | ||||
STRING | XP_004496878.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 4e-38 | bHLH family protein |