PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004496640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 27251.1 Da PI: 9.6439 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.4e-10 | 70 | 121 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ h ++E++RR+++ + + Lr+llP ++ ++K s ++ +Av+YI++L+ XP_004496640.1 70 KMVHRQIEKQRRQEMATLHASLRSLLPLQF--IKGKRSLSDQMNEAVNYINHLK 121 678*************************65..********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.42E-6 | 66 | 125 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-10 | 68 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.144 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-9 | 70 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 70 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MFPLQPSNEL SIPLSNTIHH QQNHKISQDL IPHDYDSLLL DFSHKKLSTT TLPPRKLSHT 60 NNLINSNKEK MVHRQIEKQR RQEMATLHAS LRSLLPLQFI KGKRSLSDQM NEAVNYINHL 120 KKNIKELGDK RDEMKKISNI PNFKRSYASC NFTIHKNNGS VGIEITSSGF REEGVPLYKL 180 MEQFLKEGFE VVSCFSIQVN GRLLHSLQCE ANNSDSVDLS ELRRKFSNMN PSFSCSD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004496640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496640.1 | 1e-175 | transcription factor bHLH118-like isoform X1 | ||||
TrEMBL | A0A1S2Y0P3 | 1e-173 | A0A1S2Y0P3_CICAR; transcription factor bHLH118-like isoform X1 | ||||
STRING | XP_004496640.1 | 1e-174 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25400.1 | 1e-36 | bHLH family protein |