PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496590.1
Common NameHSFB2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 267aa    MW: 30048.1 Da    PI: 8.2729
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35241142101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d++++++isw+++g++f+v++++ fak++LpkyFkh+nf+SFvRQLn+YgFkkv  ++         weF ++ Fk+g+k+ll++
  XP_004496590.1  24 FLIKTYDLVDDRTIDDVISWNDTGTTFIVWNPTVFAKDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFYNDCFKRGEKRLLCD 109
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_004496590.1 110 IQRRK 114
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.95E-3519113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-5520113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAPSAEHNAD SSTADSQRSS PTPFLIKTYD LVDDRTIDDV ISWNDTGTTF IVWNPTVFAK  60
DLLPKYFKHN NFSSFVRQLN TYGFKKVVPD RWEFYNDCFK RGEKRLLCDI QRRKIVSASP  120
LPLTAISTMK KIVSPSNSGE EQVISSNSSP SIAPADLLDE NERLRKENMQ LKKELDAMKS  180
LCNKILNLMS SYGKFQSEER KECCSTATKT LNLLPAKRCN GEDAAAEDRN PKLFGVAIGT  240
KRARGEGRCF DDDTVLSLHQ PVHADVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-242411920125Heat shock factor protein 1
5d5u_B7e-242411329129Heat shock factor protein 1
5d5v_B7e-242411329129Heat shock factor protein 1
5d5v_D7e-242411329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1949710.0FJ194971.1 Cicer arietinum cultivar 209 heat shock transcription factor (HSFB2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496590.10.0heat stress transcription factor B-2a
SwissprotQ9SCW43e-84HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1S2XYS70.0A0A1S2XYS7_CICAR; heat stress transcription factor B-2a
STRINGXP_004496590.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-84heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]